Detail information of GWHGAAEX011101/evm.TU.scaffold_35.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|6.00E-11RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01183.00E-180FOG: RRM domain
nrgi|695058407|ref|XP_009417518.1|0PREDICTED: oligouridylate-binding protein 1B-like isoform X2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LQI9|UBP1B_ARATH1.00E-180Oligouridylate-binding protein 1B
trEMBLtr|M0U070|M0U070_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P14120_001}
TAIRAT1G173703.00E-180oligouridylate binding protein 1B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003426266512666646-
Transcript Sequence

Network for GWHGAAEX011101

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1611273.20E-14
PF00076.21RRM_11462168.90E-19
PF00076.21RRM_12623285.30E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.920
SRR2545915Juvenile tuber32.190
SRP108465SRR5643513five period of Gastrodia elata18.680
SRR5643514five period of Gastrodia elata19.140
SRR5643515five period of Gastrodia elata19.040
SRR5643524five period of Gastrodia elata16.210
SRR5643525five period of Gastrodia elata21.180
SRR5643528five period of Gastrodia elata24.480
SRR5643658five period of Gastrodia elata21.040
SRR5643659five period of Gastrodia elata33.410
SRR5643660five period of Gastrodia elata38.880
SRR5643661five period of Gastrodia elata38.550
SRR5643662five period of Gastrodia elata33.620
SRR5643663five period of Gastrodia elata30.720
SRR5643664five period of Gastrodia elata34.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.090
SRR6049655Rhizomagastrodiae_C368-T10_good_133.410
SRR6049656Rhizomagastrodiae_C368-T07_good_127.820
SRR6049657Rhizomagastrodiae_C368-T07_good_123.780
SRR6049658Rhizomagastrodiae_C368-T04_good_131.230
SRR6049659Rhizomagastrodiae_C368-T04_good_126.710
SRR6049660Rhizomagastrodiae_C368-T01_good_130.200
SRR6049661Rhizomagastrodiae_C368-T04_good_128.950
SRR6049662Rhizomagastrodiae_C368-T01_good_127.890
SRR6049663Rhizomagastrodiae_C368-T01_good_128.900
SRR6049664Rhizomagastrodiae_C368-T10_good_124.290
SRR6049665Rhizomagastrodiae_C368-T10_good_124.290
SRP279888GastroGastrodia elata tuber 44.26
JuvenJuvenile tuber26.16
Mother_GastroMother tuber of Gastrodia elata 26.58
Mother_JuvenMother tuber of Juvenile 21.10