Detail information of GWHGAAEX011102/evm.TU.scaffold_35.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262198500|ref|YP_003269709.1| | 2.00E-33 | cation transport protein ChaC [Haliangium ochraceum DSM 14365] |
| KOG | KOG3182 | 5.00E-101 | Predicted cation transporter |
| nr | gi|749502292|ref|NP_001291354.1| | 3.11E-107 | cation transport regulator-like protein 2 [Elaeis guineensis] |
| trEMBL | tr|M0SC12|M0SC12_MUSAM | 2.00E-109 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P05440_001} |
| TAIR | AT5G26220 | 5.00E-101 | ChaC-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000034 | 2816927 | 2820308 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011102
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04752.11 | ChaC | 22 | 199 | 6.70E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K22596 | GGCT | Metabolic pathways | map01100 |
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006751 | Biological Process | glutathione catabolic process |
| GO:0003839 | Molecular Function | gamma-glutamylcyclotransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.040 |
| SRR2545915 | Juvenile tuber | 2.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.250 |
| SRR5643514 | five period of Gastrodia elata | 5.120 | |
| SRR5643515 | five period of Gastrodia elata | 9.570 | |
| SRR5643524 | five period of Gastrodia elata | 3.190 | |
| SRR5643525 | five period of Gastrodia elata | 2.320 | |
| SRR5643528 | five period of Gastrodia elata | 20.760 | |
| SRR5643658 | five period of Gastrodia elata | 4.690 | |
| SRR5643659 | five period of Gastrodia elata | 6.030 | |
| SRR5643660 | five period of Gastrodia elata | 10.760 | |
| SRR5643661 | five period of Gastrodia elata | 4.760 | |
| SRR5643662 | five period of Gastrodia elata | 26.220 | |
| SRR5643663 | five period of Gastrodia elata | 12.390 | |
| SRR5643664 | five period of Gastrodia elata | 17.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.80 |
| Juven | Juvenile tuber | 3.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 57.53 | |
| Mother_Juven | Mother tuber of Juvenile | 41.29 |