Detail information of GWHGAAEX011109/evm.TU.scaffold_35.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16091.00E-121Protein involved in mRNA turnover and stability
nrgi|225443415|ref|XP_002268835.1|1.01E-136PREDICTED: E3 ubiquitin-protein ligase MARCH1 [Vitis vinifera]
trEMBLtr|D7SRZ9|D7SRZ9_VITVI4.00E-137Putative uncharacterized protein {ECO:0000313|EMBL:CBI18431.3}
TAIRAT1G504401.00E-121RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003436387793663965+
Transcript Sequence

Network for GWHGAAEX011109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv751222.30E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.830
SRR2545915Juvenile tuber14.950
SRP108465SRR5643513five period of Gastrodia elata11.750
SRR5643514five period of Gastrodia elata13.780
SRR5643515five period of Gastrodia elata11.270
SRR5643524five period of Gastrodia elata14.070
SRR5643525five period of Gastrodia elata10.840
SRR5643528five period of Gastrodia elata9.970
SRR5643658five period of Gastrodia elata12.380
SRR5643659five period of Gastrodia elata12.810
SRR5643660five period of Gastrodia elata10.260
SRR5643661five period of Gastrodia elata11.890
SRR5643662five period of Gastrodia elata11.270
SRR5643663five period of Gastrodia elata13.770
SRR5643664five period of Gastrodia elata10.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.060
SRR6049655Rhizomagastrodiae_C368-T10_good_110.880
SRR6049656Rhizomagastrodiae_C368-T07_good_111.470
SRR6049657Rhizomagastrodiae_C368-T07_good_18.450
SRR6049658Rhizomagastrodiae_C368-T04_good_17.300
SRR6049659Rhizomagastrodiae_C368-T04_good_17.200
SRR6049660Rhizomagastrodiae_C368-T01_good_18.640
SRR6049661Rhizomagastrodiae_C368-T04_good_18.630
SRR6049662Rhizomagastrodiae_C368-T01_good_19.610
SRR6049663Rhizomagastrodiae_C368-T01_good_18.450
SRR6049664Rhizomagastrodiae_C368-T10_good_111.650
SRR6049665Rhizomagastrodiae_C368-T10_good_111.650
SRP279888GastroGastrodia elata tuber 14.19
JuvenJuvenile tuber11.83
Mother_GastroMother tuber of Gastrodia elata 13.36
Mother_JuvenMother tuber of Juvenile 7.69