Gene detail

Detail information of GWHGAAEX011111/evm.TU.scaffold_35.58

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|17230935\|ref\|NP_487483.1\|	p-aminobenzoic acid synthase [Nostoc sp. PCC 7120]
KOG	KOG1224	Para-aminobenzoate (PABA) synthase ABZ1
nr	gi\|657943386\|ref\|XP_008368471.1\|	PREDICTED: putative aminodeoxychorismate synthase isoform X1 [Malus domestica]
Swissprot	tr\|Q6TAS3\|ADCS_SOLLC	Aminodeoxychorismate synthase, chloroplastic (Precursor)
trEMBL	tr\|M5X9F5\|M5X9F5_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22106.1}
TAIR	AT2G28880	para-aminobenzoate (PABA) synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000034	3769836	3813128	-

Transcript Sequence
>GWHTAAEX011111 AAAAAAAGCAGCCTCAAACTTCTCAAAGCATTCGATCTGATATTTCACGACCGACCTAAAAAGGAAGTACAAAAATGGTCATACTCCATTCACCGCACAGCCCGTGTTCCCTCTCTTGTTTGCCTACGTTTCCAACGCGGAATCGAGATGCAAAACGCTCTGGCGATCTCATCTCGGCCGCCATGGTTCCTTCATTCCAGGTCATTCGCCTCTGCAAATCTCTATTCGCTTGCTGGGATATCCTACCGACAAGCCGGCCCATCCACCGCTCCTCCACTCCAGATTCGGGCCACCCGATGGTCGACCGATCATTTCCGACCGAAAAATGCAAAAACACAAAACAGGAGTTGTCCGCAAGAGCTTGTACGAACTCTCCTGATTGATAACTACGATAGTTACACCTATAACATCTACCAGGAGCTGGCCGTTGTCAATGGAGTTCCTCCAATAGTTATTCACAATGATGAGTGGACATGGGAGCACGCTCACTACTACTTGTACAAAGAAAATGCTTTTGATAACATTGTCATATCACCCGGGCCTGGCTCTCCCACATGCCCAATGGACATAGGGATATGCTTGCAAATATTAATTCGATGCAAGGACATTCCGATATTAGGAGTTTGTCTTGGCCACCAGGCATTGGGTTTTGCATATGGTGCTCAAATTGTGCAAGCTCCAGAACCAGTTCATGGGCGTCTGAGCGAAATTGAGCATATTGGATGCAATCTCTTCAGTGGTATTCCATCAGGACAAAGATCAGGATTCAAGGTTATGCGTTACCATTCGCTTGTGATAGCTTCAGATTTGATTCCTGAGGAACTTGTGCCCACAGCTTGGAGTACTTCCATGCGTACGCATACATATTTTGAGACACAAGAATATGAAGGTGCAGGATTATCTGATGCTGACATTTTAAATGACCCGAAGAGAAGCAAAGTCCTTATGGGTCTGATGCACCGCACCAGACCACATTATGGGATACAGTTTCATCCTGAGAGCATTGCTACCTCTTATGGTAGGAAGATCTTTGAGAATTTCAAGATGATAACAGTCGACTATGGATTAAGGTCCAGCTTACAAAAAACTTTTGACCTGATGCAGGTGGCCAGTGCCTGTCAGCCACCTAACGGATTTCAAACAAAAAATCTATTGCTTAACAAAGATCCCTTGAAAAAAAATTTATGCTTGTGTCTGAATTCAACTCTTGCATCTAGAAATGTGGATGCCAAGCATCTGAAATTGAAATGGAAGAAGATTGATTTCTTAGAAAGTCAGGTTGGAGGCTCAAAAAATATTTTCTGTAAACTATTTGGGACTGAGAATGCAGAAAATACGTTTTGGCTGGATAGTTCCTCCACGGACCAGGGCCGGTCCCGTTTTTCATTCATGGGTGGAAAAGGCGGTTCATTGTGGAAGCAACTAACCTATCATTTATCACAACGAAGTGAAATGACAGGTAAAACTGGAGGGCATTTATCATTTCAAGATGTCAATGGTTTTGTGAAAACAAAATATCTAGAAAATGGCCTATTTGATTTTCTGGATAAGGAACTCAAGTCATTTCATTATGACAAAGAAGACTTTGAAGGCTTGCCCTTTGACTTCTGTGGCGGGTTTATAGGCTTCATTGGGTATGATCTCAAAGTGGAATGCGGTGCGTCGGCAAACAGATTCAAATCAGCAGCTCCGGACGCCTGTTTGTTCTTTGCCGATAACATTGTAGCCGTTGACCATAGTACCGGCGATGTTTACGTCCTGCAAGTACAACAAACTGCAATTGATTCACAAGGCTGCTGCAAAGAAGAAGACAGTTCTTGGCTGAGTGAAACTGAGAGGAAGCTCCTGAGCCTGAAAAGCAGCAAGATGATGATGGCTCCTACCGAGCTGAAACAACCGCGGCAGAAGATGGCATCAGAAATTCCAGCGCAATTCGTGGTTGATAAATCAAAGGATGAGTATATGGAAGATGTTGAAAGGTGTTTGGGATTTATCAGGGACGGGGAAAGCTATGAGCTGTGCCTCACAACTCAGATGCGGATGAGTGTAGGCAGCAGCATAAATGCTCTGAATGTGTACCTGAATCTGAGGGAAGCAAATCCCGCGCCTTACGCGGCCTGGCTTAATTTCTCGTGGGAGAATTTGTGCGTATGCTGCTCCTCCCCGGAGAGGTTCTTGAGGCTGGATAGGGTCGGCCTGCTGGAAGCAAAACCTATGAAGGGAACCATTGCTCGGGGGAGGACTGCCGAGGAGGACCATCGTCGGAAGCTGCAGCTGCAGCACAGTGAAAAGGAACAGGCGGAAAATCTGATGATTGTGGATGTGGTTCGGAACGATCTGGGGCGGGTGTGCCAGGGCGGGAGCGTGTGCGGGGCGGAGGGGCTGATGGCGGTGGAGTCGTACGCGACGGTGCACACGATGGTGAGCACGGTTCGAGGGAAGAAGAGGAGGGAGAGGAGCGCGGTCGACTGCATCAAGGCCGCCTTCCCTGGAGCCTCCATGACCGGAGCTCCGAAGCTCAGGTCCATGCGCATCCTGGACTCACTGGAGGCCTCCTCCAGAGGGATATACTCCGGATCCATAGGCTTCCTTTCATACAACCAAACCTTCGATCTCAACATCGTCATCAGGACCGTCGTTCTCCACCGCGGCCAGGCTTCCATCGGAGCCGGCGGCGCCGTCATCGCCCTCTCCAAACCCGATCAAGAGTACCACGAAATGCTGCTCAAGGCTCGCGCCCCCGCCGCTGCGCTCCTCCATCAGCCTTCTTCTTCCCCCCTCAGTTAGGGCTTATTATTGCTTGCCTAACAATTTATTTTCATTTATATTATTGTTTGTAACATGTGTGCTTTGATATTGATCTTGTAAGAGTTCAAATTTAATACTGACCAAAAACACCATTTGATCTTATGGGTTGTTTGGTTTGATATCATGTGAAAAATTATTAAGATAGCAA

Network for GWHGAAEX011111

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00117.27	GATase	76	235	1.70E-26
PF00117.27	GATase	255	298	8.70E-07
PF04715.12	Anth_synt_I_N	392	536	4.90E-18
PF00425.17	Chorismate_bind	601	861	2.20E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13950	pabAB	Folate biosynthesis	map00790

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.070
SRP064423	SRR2545915	Juvenile tuber	7.820
SRP108465	SRR5643513	five period of Gastrodia elata	10.860
	SRR5643514	five period of Gastrodia elata	10.750
	SRR5643515	five period of Gastrodia elata	11.510
	SRR5643524	five period of Gastrodia elata	12.210
	SRR5643525	five period of Gastrodia elata	29.300
	SRR5643528	five period of Gastrodia elata	24.160
	SRR5643658	five period of Gastrodia elata	53.910
	SRR5643659	five period of Gastrodia elata	10.580
	SRR5643660	five period of Gastrodia elata	11.720
	SRR5643661	five period of Gastrodia elata	12.030
	SRR5643662	five period of Gastrodia elata	13.680
	SRR5643663	five period of Gastrodia elata	13.470
	SRR5643664	five period of Gastrodia elata	11.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.860
SRP279888	Gastro	Gastrodia elata tuber	18.81
	Juven	Juvenile tuber	15.92
	Mother_Gastro	Mother tuber of Gastrodia elata	35.54
	Mother_Juven	Mother tuber of Juvenile	28.97