Detail information of GWHGAAEX011117/evm.TU.scaffold_35.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 1.00E-53 | GATA-4/5/6 transcription factors |
| nr | gi|672182375|ref|XP_008811434.1| | 1.04E-90 | PREDICTED: GATA transcription factor 24-like [Phoenix dactylifera] |
| Swissprot | tr|Q8GXL7|GAT24_ARATH | 5.00E-73 | GATA transcription factor 24 |
| trEMBL | tr|M0RFV3|M0RFV3_MUSAM | 5.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P06260_001} |
| TAIR | AT4G24470 | 1.00E-53 | GATA-type zinc finger protein with TIFY domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000034 | 4169373 | 4187150 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011117
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06200.13 | tify | 49 | 79 | 4.10E-11 |
| PF06203.13 | CCT | 107 | 149 | 7.60E-17 |
| PF00320.26 | GATA | 182 | 218 | 1.40E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.320 |
| SRR2545915 | Juvenile tuber | 17.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.790 |
| SRR5643514 | five period of Gastrodia elata | 17.550 | |
| SRR5643515 | five period of Gastrodia elata | 17.470 | |
| SRR5643524 | five period of Gastrodia elata | 17.670 | |
| SRR5643525 | five period of Gastrodia elata | 18.740 | |
| SRR5643528 | five period of Gastrodia elata | 22.580 | |
| SRR5643658 | five period of Gastrodia elata | 20.970 | |
| SRR5643659 | five period of Gastrodia elata | 17.670 | |
| SRR5643660 | five period of Gastrodia elata | 17.830 | |
| SRR5643661 | five period of Gastrodia elata | 19.970 | |
| SRR5643662 | five period of Gastrodia elata | 18.270 | |
| SRR5643663 | five period of Gastrodia elata | 16.960 | |
| SRR5643664 | five period of Gastrodia elata | 17.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.32 |
| Juven | Juvenile tuber | 24.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.16 | |
| Mother_Juven | Mother tuber of Juvenile | 30.44 |