Detail information of GWHGAAEX011118/evm.TU.scaffold_35.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2204 | 0 | Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases |
| nr | gi|672132058|ref|XP_008789604.1| | 0 | PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Phoenix dactylifera] |
| Swissprot | tr|Q9C512|MNS1_ARATH | 0 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 |
| trEMBL | tr|D7SS40|D7SS40_VITVI | 0 | alpha-1,2-Mannosidase {ECO:0000256|RuleBase:RU361193} |
| TAIR | AT1G51590 | 0 | alpha-mannosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000034 | 4285511 | 4322256 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011118
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01532.19 | Glyco_hydro_47 | 110 | 541 | 4.60E-152 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH47 |
| Carbohydrate-Active enzymes Family | GH47 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01230 | MAN1A_C, MNS1_2 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 | ||
| Various types of N-glycan biosynthesis | map00513 | ||
| Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0004571 | Molecular Function | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 81.500 |
| SRR2545915 | Juvenile tuber | 151.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 80.980 |
| SRR5643514 | five period of Gastrodia elata | 68.480 | |
| SRR5643515 | five period of Gastrodia elata | 81.570 | |
| SRR5643524 | five period of Gastrodia elata | 78.010 | |
| SRR5643525 | five period of Gastrodia elata | 77.830 | |
| SRR5643528 | five period of Gastrodia elata | 88.050 | |
| SRR5643658 | five period of Gastrodia elata | 74.430 | |
| SRR5643659 | five period of Gastrodia elata | 82.570 | |
| SRR5643660 | five period of Gastrodia elata | 102.410 | |
| SRR5643661 | five period of Gastrodia elata | 97.720 | |
| SRR5643662 | five period of Gastrodia elata | 79.830 | |
| SRR5643663 | five period of Gastrodia elata | 79.590 | |
| SRR5643664 | five period of Gastrodia elata | 75.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 88.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 89.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 90.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 95.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 102.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 85.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 97.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 94.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 86.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 91.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 91.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 94.83 |
| Juven | Juvenile tuber | 96.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 133.38 | |
| Mother_Juven | Mother tuber of Juvenile | 141.61 |