Gene detail

Detail information of GWHGAAEX011132/evm.TU.scaffold_35.92

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743767765\|ref\|XP_010914153.1\|	0	PREDICTED: VIN3-like protein 2 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9SUM4\|VIL2_ARATH	7.00E-153	VIN3-like protein 2
trEMBL	tr\|J3L9M7\|J3L9M7_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB02G13440.1}
TAIR	AT4G30200	2.00E-152	vernalization5/VIN3-like

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000034	5051529	5058000	+

Transcript Sequence
>GWHTAAEX011132 GCGTAAAAGGCCAAATGTCATCCACAAGTCCATAAGAATATAAAACGGCTAATATTGCAAATAATATTGGATTATTGCCCGAGGCTCATTTTCCTCTTCGCTCGTGGGCGTTGGCGGAGGGTGATCGAAAAAGAGGAGATGCGCTCCCTCTTGTAATGCTAAGATTGTCGGAAAGAGATCGCGCCGCCATGGATCCTCCTTTCTCAGGCATTGCTGGGGACTATAGTTTTGCTAGGGTACACTTTTAAGTTCCTCTTCCTCTTTCTGGAAGGGCAAAGAATCTTTTCATTGGAAGGTATATGTATGGCTTGTGTAAGATTCTACTTTCTTTCTTCTCTCTTGGTTTGCTAGGATTTAAATGGTTGGCCCAGTATCATGTCTCCTCAGAGGCTTCCCCTTTTAATAACTCTGAAATCGTTGTGATGCTTTGATTTGATATTGAAGTTATGTAAGGCTATTGTACTAACTGAATAAGAATCTTTCTGATGGTGTACAGTTGCAACCTCAGGCATCATGTTGCAAAAAGTTTGGATAATATCGAGCTTCTATTTATTATTTATATTTTTATGTTTTGCGGCTACTTTTTTGGATCGGAATTCAAGCATTCCAAGTCTCACCCGAGTATTATTCTTTTTTCTTCTTATTTTATTATGATTGAACTGTATTCTGCAACAGGATATTTACTTGGTGCTTCAAAATGCCAAAAGTTGAACATCAAGGAAAAGAGGGAGATTGTTTGGCAATTGCTCAAATGGCCTGAGACTGCGCATGAAAAGCTTCAGACATGGAGCCGCCGGGATCTTGTAGAGATTCTTTGTGTGGAGATGGGGAAGGAGAGGAAGTACACCGGACTGACTAAGCAGAAACTGATTGAAAATCTTTTTAAAATTCTGTCCGAAAAGAAATTGGGCAAATATGCAGAGGATACAGGCTCAACTCAGTATCCTTGTAGGCCGGAACCTCAAACTCCAGCAAAAAGGCAGCGGAAAAACGATCACCCTTTGCGCCTGCCAATTGAAACAAACAATCTCCGTCTTACTTATGATGCTGATGCTTCAAAGATTACTCGTTTCTGCCTCAATTTAGCTTGTCGGGCGATCTTAAGCCAGGAGGCCTTGTTTTGCAAGAGATGCTCTTGCTGTATCTGTCACAAGTATGATGATAATAAAGACCCGAGCCTTTGGCTGTTTTGCAGCTCTGAAGAATCGAGCCAAGGGGAATTATGCCGCTATTCTTGCCACGTAGATTGTGCCTTGACGGATGATAGGACTGGCATTGCAAATAATGGACAGCGTTCAAAGCTTGATGGAAGCTATTATTGTGTTCACTGTGGTAGAGTGAACAGCTTGCTGGGATGCTGGAGGAAGCAACTCACAGTAGCCAAGGATGCCAGGAGGGTTGATGTCCTTTGCCATCGAGTTTCCTTAAGCCATAGGCTCCTCATTGGAAGCCAAAAATATGAAAGTTTGCATGAAATAGTGGAGGAGGCAATGAAGAAGCTGGAAGCTGAGGTCGGCCCTCTGCTTAACCCGCAAAACATGGGCCGCGGGATTGTGAATAGGCTCTCGGTTGGTGCTGAAGTCCAAAGACTCTGTGCCCAAGCTGTTGAGGCTCTTGATACCCTTCTGTCACAGAATGCCCATCCCGCTCCTCAAAGCCGTCCTCCTCTCTCTGCTCTAACCAATTTCATAAAATTCGAAGATAAGTCGTCATCATCCCTCGTCGTAGTTTTGGATTGCGAAACCGTTCACTCTCTATCCGAAGAGGCGCTCGGATTCACAATCTGGCATCGTGAGGCTGATTCTGCAGACTATCCTTGTGAGCCAACGGGCACACTTTATAAGCCAAACAGAAGGCTTGTAGTAACGGGACTGTCTCCAGGCAGTCCTTACATCTTCAAAGCTGTTGCATTTATTGGGGAAGGCACAACAGAGTTGGAGAAGTGGGAAGCAGGAGTAACAACCACGGATGACAAAATAAGAGAGCAGGCGTCGCCGAAGACCAACAGCAGCGGCCTCTCCAACCCTTCGTCCGAGGCAGACGAATCTCGTAACACTGGCCTGTATGCTGACCTGAACGAATCCCCGAAGTCGTCCGACCAAATCTACTGCTGCAAGGAAGAGGACCAGGAAGAGCTGCCGGGCCTCTCTGAGTCTGCCCTGGACGAGGAGCCAAACTCCGCCACGCTGAACACGGACTCCCATCGGGACTCGAACAACTCGACGGAGGTCAACCTGTCGCTGGACGCCCCGAAGCTGGAAAACGCGTCAAAGATTCCCACCGGGAACGAGATAGTCGTCGCCCCGGCGAAGCCCAGCTTCAATACCCAGCTCGAATGCAGCGCTCAGAAGGACACGCCCGGGAGCTCATCGAAGAAGAGGAGCGGCAAATGCGAAGAATTCCGAGCCTCCAAGGACGGATGTTTGGAAGGGGACTACGAGTACTGCGTCAAGACGATTCGTTGGCTGGAGTGCCAAGGCTACATTGAAAGCAACTTCAGGGTCAAGTTTCTGACTTGGTTCAGCCTGAGGGCAACGCCGCAGGAGAGGAGAGTTGTGAGCGTTTATGTGGATACCCTCATTGATGACCCTGGAAGCCTCGCCGGTCAGCTGGTTGACACTTTCTCGGACGCTATCTGCAGCAAGAGGCTGCTGCCTCTTGTGCCCAATGGCTTCTGCATGAGGCTCTGGCACTGAAGAAGGCTGGATGGAGGTGGGTATTATTGTTATTTCCTGAATGAAATGATATTCATTGGATAGAAATTGGTGCATTTGATTCTTATTTTTGAAAAAAAAAGAAGCAACTTTTTTTTTCCCTATTGATCAATGATTTCAGGATAAGGCATTTCAGTTTAAATTTGTAAGTTGTAAGTTATACCAAAGCTCATTTGTCATTGAACCTTTGATTTATATTTATTGTTACAGTAGTCTTTTCTGTTTTTTGTCTTCTTTTTTATTATTATTTGTTCTTTGGATGAAAGTCTTTAATTATTCATTAGAGTGCAAAGAGTTGC

Network for GWHGAAEX011132

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07227.10	PHD_Oberon	200	317	4.70E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.940
SRP064423	SRR2545915	Juvenile tuber	21.750
SRP108465	SRR5643513	five period of Gastrodia elata	45.490
	SRR5643514	five period of Gastrodia elata	35.620
	SRR5643515	five period of Gastrodia elata	41.090
	SRR5643524	five period of Gastrodia elata	44.340
	SRR5643525	five period of Gastrodia elata	56.230
	SRR5643528	five period of Gastrodia elata	43.870
	SRR5643658	five period of Gastrodia elata	51.150
	SRR5643659	five period of Gastrodia elata	17.630
	SRR5643660	five period of Gastrodia elata	14.300
	SRR5643661	five period of Gastrodia elata	18.180
	SRR5643662	five period of Gastrodia elata	30.930
	SRR5643663	five period of Gastrodia elata	17.370
	SRR5643664	five period of Gastrodia elata	15.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.610
SRP279888	Gastro	Gastrodia elata tuber	19.68
	Juven	Juvenile tuber	17.92
	Mother_Gastro	Mother tuber of Gastrodia elata	82.99
	Mother_Juven	Mother tuber of Juvenile	80.56