Detail information of GWHGAAEX011135/evm.TU.scaffold_35.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|269837205|ref|YP_003319433.1|9.00E-12small GTP-binding protein [Sphaerobacter thermophilus DSM 20745]
KOGKOG03932.00E-122Ras-related small GTPase, Rho type
nrgi|743849926|ref|XP_011028604.1|5.69E-138PREDICTED: rac-like GTP-binding protein ARAC8 [Populus euphratica]
Swissprottr|Q6Z808|RAC3_ORYSJ1.00E-135Rac-like GTP-binding protein 3
trEMBLtr|A0A067KFV3|A0A067KFV3_JATCU5.00E-136Uncharacterized protein {ECO:0000313|EMBL:KDP31135.1}
TAIRAT5G628802.00E-122RAC-like 10

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003452380505262718+
Transcript Sequence

Network for GWHGAAEX011135

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras91784.30E-51
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K04392RAC1 Ras signaling pathway map04014
Rap1 signaling pathwaymap04015
MAPK signaling pathwaymap04010
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
VEGF signaling pathwaymap04370
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
PI3K-Akt signaling pathwaymap04151
Phagosomemap04145
Focal adhesionmap04510
Adherens junctionmap04520
Tight junctionmap04530
Regulation of actin cytoskeletonmap04810
Toll-like receptor signaling pathwaymap04620
Natural killer cell mediated cytotoxicitymap04650
B cell receptor signaling pathwaymap04662
Fc epsilon RI signaling pathwaymap04664
Fc gamma R-mediated phagocytosismap04666
Leukocyte transendothelial migrationmap04670
Chemokine signaling pathwaymap04062
Pancreatic secretionmap04972
Neurotrophin signaling pathwaymap04722
Axon guidancemap04360
Axon regenerationmap04361
Osteoclast differentiationmap04380

Gene Ontology

GO term OntologyName
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.990
SRR2545915Juvenile tuber77.010
SRP108465SRR5643513five period of Gastrodia elata33.570
SRR5643514five period of Gastrodia elata44.360
SRR5643515five period of Gastrodia elata35.760
SRR5643524five period of Gastrodia elata40.520
SRR5643525five period of Gastrodia elata56.310
SRR5643528five period of Gastrodia elata48.550
SRR5643658five period of Gastrodia elata67.380
SRR5643659five period of Gastrodia elata34.050
SRR5643660five period of Gastrodia elata29.040
SRR5643661five period of Gastrodia elata29.840
SRR5643662five period of Gastrodia elata27.500
SRR5643663five period of Gastrodia elata33.650
SRR5643664five period of Gastrodia elata32.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.700
SRR6049655Rhizomagastrodiae_C368-T10_good_156.710
SRR6049656Rhizomagastrodiae_C368-T07_good_144.640
SRR6049657Rhizomagastrodiae_C368-T07_good_141.400
SRR6049658Rhizomagastrodiae_C368-T04_good_142.410
SRR6049659Rhizomagastrodiae_C368-T04_good_141.370
SRR6049660Rhizomagastrodiae_C368-T01_good_143.970
SRR6049661Rhizomagastrodiae_C368-T04_good_139.390
SRR6049662Rhizomagastrodiae_C368-T01_good_139.710
SRR6049663Rhizomagastrodiae_C368-T01_good_145.680
SRR6049664Rhizomagastrodiae_C368-T10_good_147.750
SRR6049665Rhizomagastrodiae_C368-T10_good_147.750
SRP279888GastroGastrodia elata tuber 34.39
JuvenJuvenile tuber33.18
Mother_GastroMother tuber of Gastrodia elata 20.48
Mother_JuvenMother tuber of Juvenile 20.15