Gene detail

Detail information of GWHGAAEX011137/evm.TU.scaffold_35.99

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672115597\|ref\|XP_008780940.1\|	0	PREDICTED: CST complex subunit CTC1 [Phoenix dactylifera]
Swissprot	tr\|D0EL35\|CTC1_ARATH	6.00E-128	CST complex subunit CTC1
trEMBL	tr\|W5FHW8\|W5FHW8_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5BL_C83F945F6.2}
TAIR	AT4G09680	1.00E-38	conserved telomere maintenance component 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000034	5269213	5324705	+

Transcript Sequence
>GWHTAAEX011137 TGCGTTTTTGTACATATCTATAGATGACAGAAATGCAATTGATAATCACCATATCCGATCTCATCTCCATCTCTCGACCCCTCACCGGCGCAGCTTCCCTTTCCTACTGCTCTCCTTTAAAGAAAGACAACAACCAGCATCCACAAGTTCATGAAAGCCTCAGTAATCTCCGCTTTCCCAACAAGCATTCAAACCCCAAATGCTTCACCCCCTTTAACTTCCCCGTCATACTGGTGGGTACCGTAGATCTACCCGTCGAACCCTCTGACCACATTTTTTTATTCTCCGACAACTCCTGCAGCATTTCCTGCGCCATTCTTGATTTCGACCTCAAGATCATCGGTTGCAAAGTACACGTTCTCGCTTGGAATTTCCTTCCTTTGAGACACCAGTGCGGGGGACTTCTTGAAGTAATCCGATGGAGCACTCTTCCATCGCTCACCTTGTCCAAAGACATGCCCGTTCTCTTACTTCGGAAAGGGGTGGAGCTGCCGGGCAGAAAGGGCATTGTTGCTGTTCTGAGATCCGTGAGCCCAGTATTCACAGTTCCTTGCCGAAACACCAGTTCTAGTTTGGATTCTATTGGCTTCCTTGGAGATGTATTCACATGCAAGTGCAGTATTTGCTCCAAACCATTTTCTGTGGATCGTTTTGATTATTCCATTTGGGCGAAGAATAGCCATCTTTTCACCAACTCAGAGTTTGTTTATTTTCTCAAGCCTTCTTCAGGGTGGCGTTTGGCTATGGCTGAGCTTGTTGGAAAGGTTATAATGGTATCAGGATTAAAGAAAAAGACGATCTTTGTTGGTGAGAAGACATCGTATGCTATGTATGTCACACCTTTGGAAATGTCTGTTTTCTTGGGCCAGTTTCCTTTGAGGAATAGGAAGCTTGAAAATGATGTTAGGGCAGGAATGACTGAAGTTGGGACTGTTTATTATGGAATTATTACTGGCGTTTATATGCAAGGGATGGCTATTGAGTTGGATAAAAAGGTTTGGCTTTTGATTACTGATCCCAACCTTGCACCACAAGCTACTCTAAGGGTTGGCGCTATCATTTCTATTAGAAATTTTCAACTGGCTCGCCCTGTATTGGCTTGGTTTGAAATTAATTTGCTTGTTAGCTGTTGCAGAACTACCATAGGTGTCAAGGCCTTCTCACTTTCTGATACTAGGTGTTACTTTAGATCTCATGGACAAAGCTTATTGATGAAGTTTGTTGAATCTCTTGTGCCAATAGCTAAATTCTGGTTACTACTCTTCATTGCTTGTTTCAGGAGAAAGTTTGCTAATATCTTATCTAACAAGGAAATTCTTGGTTCAAGAAATAAGGAAGGGCTGGTTCAGGTTTATGCACGCACGTTTTTGCATTCACATTTTTTTCAACCTCAACATGGGATTTTCATGGAATTTTGCCAACCGCCTTCTACTGTCCAATATGAGAAGAACGATCCGCCCATGAAGCTGGTAGTACCAATATATAACTTTATTTTCAAGTGCGAAGAGACATGGGGATCATTGCTAGAGGAAAATCAGTGCCATGATGACAATTTTATAATTGGAGGCAATGTGCCTTGTGAAAGCATCCCATCATCCCATATAATTAGAAGAATCATATCAAGTGATATTCTTGGCTGCATTTTGATGGGCAGTATCAAGAGCACCTCCTCTGGAAAGCTGCTGCTAGTTGATGCCACCGGAAGTTTAGATGTTGTGATACCAGATATTCTTCCAAGTTTCTGCTGTCAGGGTATTCACGAGATTAGAGAGTTTAAGGTTGTCCTTGAAGGTCCATCCTTACAAGAAGAATTTTTGAATTTGCATTCTGTTGAAGAACTCTCATGCAGGGGTATTTTTGAGGAGCTAACTACGAAGAAAAAATTAAATCAACTTGGCATTTATGTTCATTTTTATCTAAAGGATTCAAGCTGTCTTAATGCACCTATCAATCTTCCTTTATGCATGGGCAATGATAGCAAGACTAATGCTAATGGAATCGGGCATCTACTTCTTTTGTCTCACAAATTTCCTGCTGTAGAGACTTATAAGATTGACACTGATGAAGTGCACAGATCTAGCTTGTTTGCAGAGGCTTTCCTCTTGCCTTACGATATTATTTTTGTAGATGAAGATGCACACAATTACCTTTCCGGCCATATACAACAAAAGCTAGATAGAGATCCCACGTATTTAAGTTCACTGAATAATCCAGAGATGAGAAACTGCAAAAAGCAAAAAAATGTTGATACTTATTCAAAGAGTTGTCTCAAACTTGCTGATTTGAGCCCTGATTTTCCTTGTTTATTTGTTTTTGCTAGAAGCAATCCTCAAATACCACATGCTGCTGCATATTTTTGCAATAAAAGAGGTTCTGGACTGGAAAATAAATCTGTTGGCCTCCATTCAGTTTTGCTAGAGTTCTTATCTGATTGCTATATCATGTATCAGTCATTGCAAGTGGGTGAGTATTACATTATGAAGTGTTCCAAAGAATGTCCCTTCTATGTTCCAAAAGGCAAGAAAAAAAGAACCTGTGACAAAGTTTCATTAAGTTCTGAGACGGATCTTTGGAAAGTTTCTTTTTCATTTAGCATGACTCAACACCAAGAAGAACAATCACTGTTTCAGACTTGCATGGACAATTTGATTATAAAATATGAGACTTGTTTGGGAAATGCATGTCGGAATGATCCAGAGTGTCTGCAGTTGTACACTCGACTGAATAATATCACCGATGTCCATTTGGTAATCTCTCAGGGTACATTGGGATCAATTTCCCAAATAAAAGCCTTAAAAGAGGAAATGCTCGGCCATTTCTCTGTTCTGCAGGAAGTGTTAACTGTGACGTCATTTATTCAGATTATGAAGTCTAATACCTCAAATTTTTTGTGTCGTGTTAGTTTGAAACAAAGTAGCTTTCTTGATACAAGTCTCTTTTCAATACGTGGGGACATAGACAACATGCATTTTTATAGTTTCAAGTCTGGGTCCTTTCTTAGCAAAAATGAGAATGTTCTTAGGCAAGACGGCTGCATCTGTTTACATGTTTGTGATGACCATAACATGATTTATATACGAGCTAAACATCATAATTACGTATATCCTGTTGGTCTGGGTCCTGGAGTAAATGCAACATTCCACCGGGTACTTGTGAAATGCTGTTCAGGTGGATTTTTCAAATTGGTTCTGACCTCTGTTTCATTTGTGGTTATTAATTCTGTGAAAGAAACAGACCTTCTAAGCAGAAAAAGACCAACTATGCATTTTCAATTAGATACGAGTAGTGTGGAAACGTACAAGTTAGCGTCACTGAGTTTGATCTCACAGTTCATTCAATTAAAGGACAACAAGCTTGCTCGGCTGCTCTGCAGGGTTGTGACAATCCACTTTCTTGTGCTGGAAAAAGGATCAGGATCAAATATGGATATAAATATGCCATCAATCAAGATCTCTTCAGCTGAATTTTTGTTGGATGATGGATCATCTTTGTGCTGTTGTTGGGCTGATGCTGAGAGAGCAGAAATGTTGCTTAGATTAAATGAAATTTTATGCAATCCATTCTCTCAATGTGGTTTCAGTTCAGTGAAGAAAAATATGAAACCTCCTGAAACAATTGGTCATCAGTTAAACGAGATGTTAAGGAAGCACAAAAAAGTTTTTGTAAAAAACTACAGAGCAGGACCAGACGCTTCGTTTTTAGATTTTGTTTTTAATGCTGATTCCAATGAAATCTTCAGCAATGCAGAGGAGAGTCTTCTCAGATTTCTTGTCAGCAATGCTTGTCAAGGGCCAACTTTTAGTGTTAGTGGTCATTTGATGGACTCAACTTCTGTGGGATTGTTGGATGGTGAATGCAAGGAATTACAGGATGCAGTCAGATCGCTACCTAACATATGGGCCACAGAAGTCAAGCACATTAATCCCCTTGAACAAGCAAGAAATTTGCTTTATGAGCTTTCGAATGGACAATGTGCTCAAGCTCCAAATTCTTAA

Network for GWHGAAEX011137

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module9

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15491.5	CTC1_2	63	344	1.20E-70

Protein Sequence

>GWHPAAEX011137
MTEMQLIITISDLISISRPLTGAASLSYCSPLKKDNNQHPQVHESLSNLRFPNKHSNPKCFTPFNFPVILVGTVDLPVEPSDHIFLFSDNSCSISCAILDFDLKIIGCKVHVLAWNFLPLRHQCGGLLEVIRWSTLPSLTLSKDMPVLLLRKGVELPGRKGIVAVLRSVSPVFTVPCRNTSSSLDSIGFLGDVFTCKCSICSKPFSVDRFDYSIWAKNSHLFTNSEFVYFLKPSSGWRLAMAELVGKVIMVSGLKKKTIFVGEKTSYAMYVTPLEMSVFLGQFPLRNRKLENDVRAGMTEVGTVYYGIITGVYMQGMAIELDKKVWLLITDPNLAPQATLRVGAIISIRNFQLARPVLAWFEINLLVSCCRTTIGVKAFSLSDTRCYFRSHGQSLLMKFVESLVPIAKFWLLLFIACFRRKFANILSNKEILGSRNKEGLVQVYARTFLHSHFFQPQHGIFMEFCQPPSTVQYEKNDPPMKLVVPIYNFIFKCEETWGSLLEENQCHDDNFIIGGNVPCESIPSSHIIRRIISSDILGCILMGSIKSTSSGKLLLVDATGSLDVVIPDILPSFCCQGIHEIREFKVVLEGPSLQEEFLNLHSVEELSCRGIFEELTTKKKLNQLGIYVHFYLKDSSCLNAPINLPLCMGNDSKTNANGIGHLLLLSHKFPAVETYKIDTDEVHRSSLFAEAFLLPYDIIFVDEDAHNYLSGHIQQKLDRDPTYLSSLNNPEMRNCKKQKNVDTYSKSCLKLADLSPDFPCLFVFARSNPQIPHAAAYFCNKRGSGLENKSVGLHSVLLEFLSDCYIMYQSLQVGEYYIMKCSKECPFYVPKGKKKRTCDKVSLSSETDLWKVSFSFSMTQHQEEQSLFQTCMDNLIIKYETCLGNACRNDPECLQLYTRLNNITDVHLVISQGTLGSISQIKALKEEMLGHFSVLQEVLTVTSFIQIMKSNTSNFLCRVSLKQSSFLDTSLFSIRGDIDNMHFYSFKSGSFLSKNENVLRQDGCICLHVCDDHNMIYIRAKHHNYVYPVGLGPGVNATFHRVLVKCCSGGFFKLVLTSVSFVVINSVKETDLLSRKRPTMHFQLDTSSVETYKLASLSLISQFIQLKDNKLARLLCRVVTIHFLVLEKGSGSNMDINMPSIKISSAEFLLDDGSSLCCCWADAERAEMLLRLNEILCNPFSQCGFSSVKKNMKPPETIGHQLNEMLRKHKKVFVKNYRAGPDASFLDFVFNADSNEIFSNAEESLLRFLVSNACQGPTFSVSGHLMDSTSVGLLDGECKELQDAVRSLPNIWATEVKHINPLEQARNLLYELSNGQCAQAPNS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000723	Biological Process	telomere maintenance

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.080
SRP064423	SRR2545915	Juvenile tuber	0.490
SRP108465	SRR5643513	five period of Gastrodia elata	2.950
	SRR5643514	five period of Gastrodia elata	2.210
	SRR5643515	five period of Gastrodia elata	2.350
	SRR5643524	five period of Gastrodia elata	2.350
	SRR5643525	five period of Gastrodia elata	1.510
	SRR5643528	five period of Gastrodia elata	3.660
	SRR5643658	five period of Gastrodia elata	2.410
	SRR5643659	five period of Gastrodia elata	2.480
	SRR5643660	five period of Gastrodia elata	2.690
	SRR5643661	five period of Gastrodia elata	6.210
	SRR5643662	five period of Gastrodia elata	3.570
	SRR5643663	five period of Gastrodia elata	3.150
	SRR5643664	five period of Gastrodia elata	2.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.140
SRP279888	Gastro	Gastrodia elata tuber	10.98
	Juven	Juvenile tuber	3.56
	Mother_Gastro	Mother tuber of Gastrodia elata	14.59
	Mother_Juven	Mother tuber of Juvenile	5.30