Gene detail

Detail information of GWHGAAEX011141/evm.TU.scaffold_35.105

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1601	2.00E-63	GATA-4/5/6 transcription factors
nr	gi\|334853412\|gb\|AEH05761.1\|	4.03E-103	CONSTANS-like 1 protein [Phalaenopsis hybrid cultivar]
Swissprot	tr\|Q9FHH8\|COL5_ARATH	2.00E-60	Zinc finger protein CONSTANS-LIKE 5
trEMBL	tr\|K9K2L6\|K9K2L6_9ASPA	2.00E-103	CONSTANS-like 1 protein {ECO:0000313\|EMBL:AEH05761.1}
TAIR	AT5G57660	2.00E-63	CONSTANS-like 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000034	5821215	5822701	+

Transcript Sequence
>GWHTAAEX011141 GTATATGAGGCCCATTAGAAACTCATATTTTAAAATACAATTCTTAATTATCTATAAGTTTAGGGAATTATTCGGTAGTAATCTATTTTTTTTTCATATAAATAATGAAAACATTAAGCTGTTAGTGTATTTATTGTACAAGAATTCAATTCAGTGGTTGCAGTGCCGTCCACGCGTCAACCTGCCATTCGTTGATAATCCAGTTCCATCTATGATCAACGAGGATAACTCATCGATCTCGCAGCCCTTATCACTATATCATTGCAATAGTAGAGCACAGCTGATGCTCCCCTCACGCATCAGAACAGGCAGCCAGCTAGCTAGAAAGATAGAGAGAGAGGGATGGGAATTGCAGACAGCGGGACTTACTGGGGCCTCTGCTCCCGCACGTGCGATGCGTGCAAGGGCCACCCCGATGCCGCTTTCCTCTGCGGTGCCTGCGCGTTGAACAGGGCCCCCCATGAGCGCGTCTGGCTCTGCGAGGTCTGCGAGCAGTCGCCGGCTGTCGTCACGTGCAAGGCCGATGCCGCCGCCCTCTGTCTCTCCTGCGATGCCGACATCCACTCCGCCAATTCCCTCGCTGGCCGCCACCACCGCGTCCCCATCGTACCATTCTTCGACCCCCCTTCCGCCGATGAATCTCACAACTGCTTCCTTTCCGAGGTCGACCCGTTTCTGGATCTGGACTATGCGTCGTCCGTCGACACCCAGGTGTGCCAGTCAGACAGCGTCGTGCCTGCTGCCCCGCCGATCGTTGTGCTCGATTTCGCTAACTACAAATCGGCTTGCGGCAGCTATGCAGGCAGCCCCAGCATTTCATCGTCGGAGGTGGGAGTGGTGCCAGACAGCGGAGGGAGCTCGATGGCCGATGTGTCGTACTACGGATTCGGGAGGCCGCCGGCGGCGGCCGCGCTGGCGATTGATCGGGAGGCGAGGGTGATGAGGTACAAGGAGAAGAGGAAGAATAGGAGGTTCGAGAAGACGATAAGGTACGCATCTAGGAAGGCATACGCGGAGACGAGGCCGAGAATAAAGGGGAGGTTCGCCAAGAGGGCGGAGGTCGAGGCGGAGGTCGACCGGATCTTCTCGTCAGCTTTCCTGTCGCCGGATCATGGTTACGGCGTCGTCCCCTCCTTTTGAGATCTCCGGCTATAAGATAAGCTGGATCAGGCCATTTTAGGTGCAGCTTCTTGATCTGTGAAGCATTTAAATTAAGCAATTTTCTATTTTTATTTTAGAATAAATGGACTAGGGAATTTAGGAATTTTAACGCTGTGGCCTCCATGATTTATCTGTAAATTACTTTTTGGACCTTTTTGGCTTTGTCGAATGTGAACTCAAATGACACAGATTGGGCATCTCGTTGAACTTCGAGCCTTTCCACAGTGGATTCCGTACGGTGACTGAGAAAAAGATAAC

Network for GWHGAAEX011141

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.23	zf-B_box	43	88	5.60E-06
PF06203.13	CCT	195	237	4.10E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.770
SRP064423	SRR2545915	Juvenile tuber	24.330
SRP108465	SRR5643513	five period of Gastrodia elata	55.000
	SRR5643514	five period of Gastrodia elata	61.840
	SRR5643515	five period of Gastrodia elata	50.890
	SRR5643524	five period of Gastrodia elata	87.720
	SRR5643525	five period of Gastrodia elata	212.010
	SRR5643528	five period of Gastrodia elata	115.420
	SRR5643658	five period of Gastrodia elata	164.880
	SRR5643659	five period of Gastrodia elata	31.100
	SRR5643660	five period of Gastrodia elata	37.620
	SRR5643661	five period of Gastrodia elata	45.730
	SRR5643662	five period of Gastrodia elata	44.540
	SRR5643663	five period of Gastrodia elata	46.070
	SRR5643664	five period of Gastrodia elata	62.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.410
SRP279888	Gastro	Gastrodia elata tuber	53.75
	Juven	Juvenile tuber	78.46
	Mother_Gastro	Mother tuber of Gastrodia elata	105.42
	Mother_Juven	Mother tuber of Juvenile	105.83