Gene detail

Detail information of GWHGAAEX011155/evm.TU.scaffold_354.4

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695014878\|ref\|XP_009394284.1\|	0	PREDICTED: serine/threonine-protein kinase SMG1-like isoform X2 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SJ91\|M0SJ91_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P30770_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000346	116456	118793	+

Transcript Sequence
>GWHTAAEX011155 ATGCAAAGTCACCTGCACCAACTCCAGCAGCAACTGACATCCCTCCTCTCCAACGCCCTACCTCAAACCCTCGACGATGCCGTCTCCTCCCAACCCTCGCCGGAATCAGCACCACCTCCGGCGAGAGGGATCGACGATTCTTCCAGAATTGCTGCCCTCGAATCTCTTCGGCGCACCGTCCTGTATCCGCCCAACGCTCCTCTCCTCCCTCATTGCGCACATTTTCTCTCCCAGGGCTTATCCCAACTACTTTCAGATAAGTCACATGGAGTTAGTCACGCAGCAGCGATGTCTTATGCTTCTCTGTGTGCTGCATTGGCTTCTTCCAACCATCTCCATGTTCATGTTCATAGGCTGGTCGATAGGTTTCTTTCTTGGGCTCTGCCGCTGATCCGGGACTTACCCGTCACAAATGGCTCGGCGGAATTGGCGCTGATTAGCATCGGGGAATTCCTCAGCGCTGGGGATGCAGCGAGCGTCGAGAGATACGTTTCATCCATTCTCAAAGCTTGTCAGGAGCTGCTTGAGGATGAGAGAACCTCACTAAATTTGCTGCACCAGCTTCTGAGTATTCTGACTTTGATCTCTTTGAAGTTTTTTCATTGTTTCCAGCCCCATTTCATCGATATTGTGGATTTGCTACTTGGTTGGGCACTTATGCCGGACCTCTCTGATTCTGGCAGATGCTTGCTTACGGACAGTTTCTTACAGTTTCGGAAGCATTGGCTAAGCAATTTGCAGTTTTCTTTAGGACTGCTATCTAAGCTTTTGGGTGACGCAGAAGCATTGATACATGATGCAAGTGTAGAGGTCAAGTCACAGTTTGGAAGGTTGCTTTCTCTTTTCTCTTGTTTCTCCACAATTTTGCAGGCGACTGCTGATGGTGTATTGGAGATGAATCTCCTTGGACAGATAAGTGAACCGCTTGAAAATCTGACTCCCCAGTTGCTGAGATGTACATTGATGTTTGGAAGGAAATTTGGATGGTCTAAATGGACGGGGGGATCTTGGAAATGTTTGATTCTTGTGGCTGAAATGCTAAATGAGAATTTTTCTCAGTTTTATCCTCTGGCTATTGATATATTTTTTCAGAGCTTGAACCTCGTTCCTTCCAACCAGGTGCTTGGTTTCCTGAAGACAAATTTACAGCTGTTATTTATTCAAAAGACTGGCCTCCTGTCTTCATCAGTGCAGATGCTGCTACAATTTCAGTCGCCTTTGTCTCATTTACGGCTGCATCCAAATCATTCTGTTGTCGCAAGCACAGCTGCTACCTACCTTTACTTTCTTCAGCATTGTTGCAATGACATAGTTTCTCAAGCAATCACCTCCTTGTTTGAAGAACTGGAGCTATTGAAAAGAAAACTTGCAGAACTACGTCAACCAGCTTTAGACTCTTGTGTAGTTCAGGTGGAAGCTGGAAATAATGGCATTCACAAGTTTAACTTAAGTTATGAAAAACAGTATTCGGAGCTTGATTTACTTTCCTTGATTAAATTTGATTTGAAGGTGATACATTGTTTACTGCCATTTGATGGTGCTGGAGGTTTAGCAAACCGAGTTTTCAATGATGTTGCTAAAAAGGATTTGTTGTCTAGAGTAGTATCTTTTATTCTCAACAAGTTTGATCCTTTTCAATTCCCCATCGAGGGTCTCCATGAGTTGCAAACCTTTGTTATCAGGACATTATACAAGTTCAGCGAATCTGAATTCCTAGTTAAATTTAATGACACCATAAAATTTGTGAATAACGCTTCTACTAATTTGAGAGCACAAGATCAACCAAATGTAGAGGCCAGAAATAAGCTGTATTGTCTGACTTTCAAGTTTTTGAGCAAATTCAGTGGAATTATGGCTAGAGCTCTAGATGTTACTTCGCCTTTGATTGTTAAAGTGGAGTCCCTAGGCTGGATTAGTTCATTTAGTCAGGTGATTGTAGCTACAAAAGAAAATAATCTGTTGGTAAGATCTTATAGAGAACCATATCAAAATGCAACTGTCAGTACATATTTACTCTTGCGCATTCTGGATGCAGCATTTGATATGGAACTGAAGGTAAGATCTCATGTTGCTCCTGTCCTAGAGCTCCTCCTGGAGGCCGGGCTTATTCATCCTGAGAACTTTTACGTTGTCTCAGAAGTTGTTCTCTGCAAACTTAGTGATTCAGACGTGACTGTAAAAAATGCATTTGGGCGTCTAATTTCTGTTGCAGCACCTGCTATTCTCTATATGCACGGCATTACTGATTTGGGATATTAA

Network for GWHGAAEX011155

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08873	SMG1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.820
SRP064423	SRR2545915	Juvenile tuber	1.320
SRP108465	SRR5643513	five period of Gastrodia elata	0.480
	SRR5643514	five period of Gastrodia elata	0.690
	SRR5643515	five period of Gastrodia elata	0.800
	SRR5643524	five period of Gastrodia elata	0.660
	SRR5643525	five period of Gastrodia elata	0.460
	SRR5643528	five period of Gastrodia elata	0.210
	SRR5643658	five period of Gastrodia elata	0.230
	SRR5643659	five period of Gastrodia elata	0.170
	SRR5643660	five period of Gastrodia elata	1.010
	SRR5643661	five period of Gastrodia elata	0.530
	SRR5643662	five period of Gastrodia elata	0.210
	SRR5643663	five period of Gastrodia elata	0.190
	SRR5643664	five period of Gastrodia elata	0.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.370
SRP279888	Gastro	Gastrodia elata tuber	1.04
	Juven	Juvenile tuber	1.56
	Mother_Gastro	Mother tuber of Gastrodia elata	0.62
	Mother_Juven	Mother tuber of Juvenile	1.45