Gene detail

Detail information of GWHGAAEX011156/evm.TU.scaffold_354.5

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0891	3.00E-18	DNA-dependent protein kinase
nr	gi\|672133176\|ref\|XP_008790196.1\|	0	PREDICTED: uncharacterized protein LOC103707474 isoform X3 [Phoenix dactylifera]
trEMBL	tr\|M0SJ91\|M0SJ91_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P30770_001}
TAIR	7290761	3.00E-18	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000346	118866	120668	+

Transcript Sequence
>GWHTAAEX011156 ATGCCTCAGAAACTGCATTCTCAGCAGCTTGTTTCTGTTTTGAGTTATATTTCCCAACGATGGAAGGTGCCTCTTTCTTCTTGGATTCAACGATTAGTCTTCAGTTGCCATGGAAGGAAAGATGGGATTCCTAGTAAAGAAGAAGTACTTGGAGAGCTTGAATCGAGTGATATATATAGAAGCGCTAATGCTGAAGAATTAATTCTTAAGAAGATATGTCCAATAAGTAATCTTGCTGCTATATGGTGGTCCATACATGAAGCTGCCAGGTTCTGCATAAATCTACGTCTTCGAACCAACCTGGGTAGTCCAACACAGACATTTGCTGCATTGGAGCGGATGCTTTTAGAAATACCAAATATCTCACAGTTTGATTTTGAGCAGAGTGAAGGCCGGTATCTGGGATCATCTAATTTCCACTTGTTACCAATGAGAATGCTTCTAGATTTTGTTGAGGCCCTTAAGAAAAATGCATACAATGCTTTCGAAGGTTCCGCTGTTCTACCGCAATCGAGTCGACAAAGTTACTTGTTTTTTAGAGCAAACAAGAAAGTTTGCGAGGAATGGTTCTCACGAATTTGTGAGCCCATGTTAAATGCTTGCGTGGCTCTCAATTGTCATGATGCAACATTTTATTACTGCACAGCACGACTGCTGGATCTTAAAAACCTGGCAGCTTCAGCTTTCAAAGACAAGTCAGAAAAATTTCAGGACATGAGAGTTAAAATTGCTGATGACGTACTGAAAGTGCTCCAATATGCATCGCTAGCTTTATGTAAGAGTCATGAGACTGAGGCTTTGATTGGTCTGCAGAAATGGGCTGGGATGACATTTTCTTCGTTGTTTATGGAAAGCACTCATCTCATCTCTAATACTAATGAAAATGACATGCATTTTTCTTGGATGACTGGACTTGCATATAAGGCACAAGGTCAGTACGAGAAGGCTGCTGCACACTTCTCTCACTTGCTTCAATCTGAAGACGCTCTTAGTTCCATGGGTTCTGATGGAATCCAGTTTATTATTGCTCAAGCTATTGAGTGCTATACATCTCTTTCTGATTGGAATTCCTTGGAAAGTTGGCTTTCTGAGCTGCAGATGCTTCGTTCTTTGCATGCTGGCAAACCATATTCTGGTGCTCTTACTGCTGCTGGAAATGAAATGAATGCGATCCATGCTTTAGCTCGTTTTGATGAAGGTGATGCCCAAGCAGCATGGGGCTATCTTGACTTGACACCTAAAAGCAGCTGCCAGCTTTCCCTTAATCCTAGTGTAGCTCTTGAGAGGAGTGAACAAATGCTTTTACGGTCAATGCTTCAAATGGAAGGTGACACTGATAAAGTGCATGAGAATCTGGATAAGGCCAAAATGATGTTAGATGAAGCCTTATCCTGTGTTCCACTTGATGGGTTAGCTGAGGCCGCTGCTGTTTCTGTTCAACTTCATTGTGTTAATGCTTTGGAAGAATGTAAGATATCAAATGGCCAGCAAGTGCCATCAATACTTGCCTCAATGGCTCGGTCACTGCATTCTCCAATCTGCCGAATTAATCAAGATAGTAGCTTATGGATGAAAATTTTTCGAATCTATCATATTATCATACCTGATTCTTATGTTACAGTTCTTTTTGGTCATAGAATGCTTAGTTTAGCTCGGAAACAAAACAATTTCAGGTTGGCTGACCGTTTAAACAAGTACTTACAGGAACATCCTTTGTCTGATCATCGGCATGCTGAGTTTCTTGCATCAAATCTAGAGTATGAAGGAATCCTACTTAAGCATGCAGTAGGGAGGGAAGACTGA

Network for GWHGAAEX011156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15785.4	SMG1	22	401	9.00E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08873	SMG1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0016310	Biological Process	phosphorylation
GO:0004674	Molecular Function	protein serine/threonine kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.550
SRP064423	SRR2545915	Juvenile tuber	0.340
SRP108465	SRR5643513	five period of Gastrodia elata	0.270
	SRR5643514	five period of Gastrodia elata	0.530
	SRR5643515	five period of Gastrodia elata	0.450
	SRR5643524	five period of Gastrodia elata	0.480
	SRR5643525	five period of Gastrodia elata	0.380
	SRR5643528	five period of Gastrodia elata	0.180
	SRR5643658	five period of Gastrodia elata	0.270
	SRR5643659	five period of Gastrodia elata	0.400
	SRR5643660	five period of Gastrodia elata	0.910
	SRR5643661	five period of Gastrodia elata	0.280
	SRR5643662	five period of Gastrodia elata	0.200
	SRR5643663	five period of Gastrodia elata	0.150
	SRR5643664	five period of Gastrodia elata	0.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.320
SRP279888	Gastro	Gastrodia elata tuber	0.01
	Juven	Juvenile tuber	1.52
	Mother_Gastro	Mother tuber of Gastrodia elata	0.15
	Mother_Juven	Mother tuber of Juvenile	1.40