Gene detail

Detail information of GWHGAAEX011170/evm.TU.scaffold_36.2

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2556	Leishmanolysin-like peptidase (Peptidase M8 family)
nr	gi\|695054369\|ref\|XP_009415312.1\|	PREDICTED: leishmanolysin-like peptidase [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0TTV6\|M0TTV6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P26530_001}
TAIR	AT5G42620	metalloendopeptidases;zinc ion binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	39689	52596	+

Transcript Sequence
>GWHTAAEX011170 AGTGTGTTTATATTTCTCCAGTTCAGCCACTGAGCCAGTCGATAAGACAGAGAGTGACGGTACCGCTTCTTCATCCCCAAATCCTCTGCTTGGAAAAGGTCCGAGCTTGAGCTCTCTCGCGAAGGAATTGTGCTATTTTTGAAGGGGCCTCTGTGTATGGATAGTTGCAGATGTGTCAGCCGTGCTGCAAAAAAAGGGATTTTTTTAGTCTGAGAGGAAAGCGATGTCTGAAAGGCAGCTTTTGGTTTGATGGAAGCTTCCGTTTTGAGTATTTGTGCGCCTATTGATGGAGGTGAAAGCCTGGGCGGGATGTCGGCTCGCATGTCCATCGAGAGCTCTTCTTTTGCTGTTTGCATTACAGATCGCAGCATTGCTTTCTATCTGCACCCGGGGTCTTACTGTAAAATCCGATGAGGGGAAGTCTGTTCATTCACAAGGCTATGAAGTGGGATCATACCTATCGCATTCATGCATACATGATGAAATACTGCATCAGAGACAGCGGCCTGGTCGGAAGGAGTATTCTGTCACCCCTCAGGTTTATCAGGAGCTTGATTCATTGAGTGGCAATGGGCGTAAGGAGAGGAGGGCATTGCTTTCAGTTTCATCTCCACCGTCATTGCTGAAAGATTCTATGCATCCTATTAGGATATATTTAAACTACGATGCTGTTGGGCATTCCACGGATAGGGATTGCAGATGTGTTGGGGATCTTGTGAAGCTCGGTGAACCTCCTGCAGTCTCTGTGCCTGGAAACCCTGCTTGTGATTCTCATGGTGATCCACCAATTTCTGTTGACTGCTGGTACAACTGTACTATAGAAGATATAGCTGGAGAAGATAAGAGGCAGCGCTTACGCAAGGCTCTCGAGAAAACTGCAGATTGGTTCAAACAAGCTCTATCTGTTGAGCCTGTAAAGGGGAATTTGCGATTGAGTGGCTATTCTGCTTGTGGTCAGGATGGAGGGGTGCAGCTTCCACATGAGTACATTGACTATGGTATTGCTGATGCAGATCTTGTTCTTTTGGTCACTACTAGACCAACTACTGGAAACACGCTTGCTTGGGCGGTAGCATGTGAGCGTGATCAATGGGGCCGTGCAATTGCTGGTCATGTGAATGTTGCTCCACGTCATTTGACTGCTGAAGCTGAGACTTTACTTTCAGCTACTTTAATACATGAGGTCATGCATGTTCTAGGTTTTGACCCTCATGCTTTTGCGCATTTTCGCAACGAGAGAAAAAGAAGACGTAATAAGGTTACCGTCAAAGTGATGGATAAAAGGCTTGGTCGTATGGTGACTCGTGTGGTCCTCCCTCGAGTGGTTATGCATTCTAGGCACCACTATGGAGCTTTCTCGGAGAACTTTACTGGCTTAGAGCTGGAAGATGGAGGTGGGAGAGGCACTTCTGGGTCACATTGGGAGAAAAGGCTGTTAATGAATGAGATTATGACAGGATCAGTCGATACTAGATCAGTAGTTTCAAAAATGACTTTGGCTTTATTAGAAGATAGCGGTTGGTATCGAGTTAATTATAGCATGGCAGATCAACTTGGTTGGGGCCGAAATCAAGGGACAGAGTTTGCCACCCTGCCTTGTAATCTTTGGAAGGGGGAATATCATTGCAACACCACACAATTATCAGGTTGTACATATAATAGGGAAGCAGAAGGCTACTGCCCTATTGTGAGCTACAGTGGAGATTTGCCACAATGGGCTCAATATTTTCCACAAGCCAATAAAGGCGGACAGTCATCGTTGGCTGACTATTGCACATATTTCGTAGCTTATTCTGATGGATCTTGCACTGACACAAATAGCGCGCGAGCACCTGACAGAATGCTTGGTGAGATGCGAGCAAGTAACTCTAGGTGCATGACTTCGTCTCTAGTTAGAACTGGATTTGTTAGAGGATCCACGACTCAAGGGAATGGTTGCTACCAGCATAGATGCAGCAATAATAAATTAGAGGTTGCGGTTGATGGGGTCTGGAAAGCATGCCCTATAATGGGTGGTCCAATCCAATTTTCTGGTTTCAATGGTGAACTGATTTGCCCAGCTTTTCATGAACTGTGCAGTTCAGCTCCTGGTCACATTAATGGCCAATGCCCAGCCTCTTGCAGTTTTAATGGTGACTGTATCAACGGAAAATGTTTCTGTTTTCTCGGTTTTGATGGCCATGATTGCAGTATGCAGTCTTGCCCAAACAATTGCAGCGGACACGGGGCATGCAATTCAAATGGCATCTGTGCTTGCGAGAATGGTCGAACCGGCATTGATTGCTCCACTGCCGTCTGTGACGAGCAATGCAGCCTGCATGGCGGCGTGTGCGACAATGGGGTGTGTGAATTCCGGTGCTCAGATTACGCCGGGTATACGTGCCAGAACAGCTCCAAGCTGCTGCCAAGCCTCTCAATTTGCAGCGATGTGCTGGTTACGGACGGATTTGAGCAGCACTGCGCCCCAAGTGAGCCAAGCATATTGCAGCAACTTGAATCCGCTGTTGTTATGCCCAACTATAACCGTTTGATGCCTGCCGGCCAAACCTTGCTGAGCATACTCGACAACGGCTATTGCGCTGCTGCTGCCAAGCGGCTGGCTTGCTGGATTTCGATCCAGCGATGCGACAGGGATGGAGATGACCGGCTGAGAGTGTGCCACTCTGCTTGCCGGTCGTATAACTCGGCCTGCGGGGCCGGTCTCGACTGCTCCGACCAAACACTCTTCAGCAGCGAGGATGATGGTGCTGAGCAGTGCACTGGCTACGGCGAAGTGAGGCCTTCTTGGGTGCGGCGCTTTCGGAACTTCTACTCCAGGAATGTTAGTAGTAGATGATAGCTGCCTGCTGCGGCTTCGGTGTCATTTGTGGCATCTTTTTTATTTTCTCATAGTGCAGAAGTGTTTGTAGGGATTATTGTAGAGTGTGTAGAGCTCAAATTGCAAGGTATTATGGCTGGGAGTGTGCCAGAGTAATCCTTAAAGAAGGATTCCTGGTTTGTGGTGGTGGTGGTGGTATTGGGTTTAGGGGTTTTTATTTTTGTTAATTTTTTCTTTTTATAAATTTAAGACCAGCCTTTTTTAGAAAAAAAAAAAAAAAGGCTGAGAGAGGTTGATGCTTTGTGGATGAGTGCGTTGATCTCATGCTTATAGTTTTCTTCTATGATGATTTAAATTTATGTGCTGTGACGTTTACTGTTTTGTTGGGTTAACTAAAATTGGGGAGTAAGTTTGCGCGGAACAGAGTGGGGGAGACTTTGTTAAATATGTATTTTTTTTTTCTCAGTTTCTGTACTTAAACAAAGCTTTAAAATGTAATTATTAGGTGGGTTGATTAC

Network for GWHGAAEX011170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01457.15	Peptidase_M8	173	599	8.00E-85
PF07974.12	EGF_2	639	666	9.30E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0007155	Biological Process	cell adhesion
GO:0004222	Molecular Function	metalloendopeptidase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.770
SRP064423	SRR2545915	Juvenile tuber	34.250
SRP108465	SRR5643513	five period of Gastrodia elata	52.870
	SRR5643514	five period of Gastrodia elata	37.580
	SRR5643515	five period of Gastrodia elata	47.760
	SRR5643524	five period of Gastrodia elata	36.350
	SRR5643525	five period of Gastrodia elata	70.720
	SRR5643528	five period of Gastrodia elata	53.490
	SRR5643658	five period of Gastrodia elata	74.770
	SRR5643659	five period of Gastrodia elata	42.210
	SRR5643660	five period of Gastrodia elata	37.210
	SRR5643661	five period of Gastrodia elata	39.460
	SRR5643662	five period of Gastrodia elata	37.590
	SRR5643663	five period of Gastrodia elata	36.900
	SRR5643664	five period of Gastrodia elata	43.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	87.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	104.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	65.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	75.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.530
SRP279888	Gastro	Gastrodia elata tuber	34.32
	Juven	Juvenile tuber	35.39
	Mother_Gastro	Mother tuber of Gastrodia elata	37.31
	Mother_Juven	Mother tuber of Juvenile	29.58