Detail information of GWHGAAEX011172/evm.TU.scaffold_36.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428208436|ref|YP_007092789.1| | 0 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Chroococcidiopsis thermalis PCC 7203] |
| nr | gi|469615209|gb|AGH62555.1| | 0 | 4-hydroxy-3-methyl-2-E-butenyl-4-diphosphate reductase [Dendrobium catenatum] |
| Swissprot | tr|Q94B35|ISPH_ARATH | 0 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic (Precursor) |
| trEMBL | tr|M4T4B5|M4T4B5_9ASPA | 0 | 4-hydroxy-3-methyl-2-E-butenyl-4-diphosphate reductase {ECO:0000313|EMBL:AGH62555.1} |
| TAIR | AT4G34350 | 0 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 189302 | 204616 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011172
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02401.17 | LYTB | 108 | 448 | 9.20E-82 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03527 | ispH, lytB | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019288 | Biological Process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway |
| GO:0050992 | Biological Process | dimethylallyl diphosphate biosynthetic process |
| GO:0051745 | Molecular Function | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 450.330 |
| SRR2545915 | Juvenile tuber | 359.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 107.730 |
| SRR5643514 | five period of Gastrodia elata | 79.080 | |
| SRR5643515 | five period of Gastrodia elata | 89.600 | |
| SRR5643524 | five period of Gastrodia elata | 74.990 | |
| SRR5643525 | five period of Gastrodia elata | 119.080 | |
| SRR5643528 | five period of Gastrodia elata | 99.870 | |
| SRR5643658 | five period of Gastrodia elata | 113.660 | |
| SRR5643659 | five period of Gastrodia elata | 146.960 | |
| SRR5643660 | five period of Gastrodia elata | 180.880 | |
| SRR5643661 | five period of Gastrodia elata | 133.900 | |
| SRR5643662 | five period of Gastrodia elata | 187.000 | |
| SRR5643663 | five period of Gastrodia elata | 205.020 | |
| SRR5643664 | five period of Gastrodia elata | 215.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 289.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 153.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 218.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 357.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 467.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 501.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 380.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 381.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 139.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 202.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 100.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 100.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 234.14 |
| Juven | Juvenile tuber | 327.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 65.38 | |
| Mother_Juven | Mother tuber of Juvenile | 124.97 |