Gene detail

Detail information of GWHGAAEX011175/evm.TU.scaffold_36.10

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1815	Predicted E3 ubiquitin ligase
nr	gi\|672133202\|ref\|XP_008790210.1\|	PREDICTED: probable E3 ubiquitin-protein ligase ARI2 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q84RR2\|ARI2_ARATH	Probable E3 ubiquitin-protein ligase ARI2
trEMBL	tr\|M0T9G0\|M0T9G0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P23120_001}
TAIR	AT4G34370	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	406972	428370	+

Transcript Sequence
>GWHTAAEX011175 AAAAGCACTGAATTATACCGTAATTCTGCCTCAAAAGTTTTTTCGTCCTCTCTGGTCTTGCCCCATCCGATCCGCTTTCTTGCGCCGGATTAGAAATCAAAATCCCTTTTACAAGCAATTCTCTTCCACTGCTGATCTTCCCCTTTTTGATCTCTGTCATGGTGGAAGACGAGGATTTTCCTTCATCAAGCGATGTGGAGGAGCCGGAGGGCAGTGATTTCTATCTGAGTGATCACGAGGATGATATCGCCGAGAACGTCCTTCAGGACCTCGAGGACGGGCGGCAGGAGGATTGCAACTGGTCTGTCTCGTCGGTTATTACGAAGGAGTCCCTTTTGGCAGCACAGAATGAAGATCTGAGAAAGATAATGGAACTATTAGCTCTGAGTGAGAAGCATGCACGGACTTTACTTATTCATTATCGTTGGGATGTGGAAAGGATTTTTGAGTTGCTTGAGCAGAAGGGAAAGGATAGGTTATTTTCAGAGGCAGGATTAACTATGTGTGAGAATAAAGTTATTGATCTGTTTAATTACCCAGACCCATTTACATGCAGTATCTGCTTTGAGGATGTGTCTTCCCTTGCAATTTCGGAAATGGATTGTGGGCACTGTTATTGCAATAGCTGTTGGACAGAATACTTTATTGTCAAAATAAATGATGGGCAAAGTCGTCGAATTAGGTGCATGACTCCAAAATGCAATGCGATTTGTGATGAAGCTGTTATTAGGAGTCTAGTTAATGCAAGACATCCAGATATTGCGAATCGGTTTGAGAGGTTTTTACTTGAATCGTACATTGAAGATAATAATAAAGTTAAATGGTGCCCCAGTGTGCCTCATTGTGGAAATGCTATACGTGTGGTTGGTGACATATACTGTGAGGTGGAGTGTACATGTCGAATGCAATTTTGTTTCAGCTGCTTATCAGAAGCTCACTCACCATGTTCTTGCATAATGTGGGAGCATTGGACAAAGAAATGCCATGATGAATCAGAAACTGTGAATTGGATCACTGTTAACACAAAACCTTGCCCTAAATGTCACAAACCCGTTGAGAAGAATGGTGGCTGCAACCTAGTTGCTTGCATATGTGGGCAGGCATTTTGCTGGTTATGCGGCGGCGCCACAGGACGTGATCACACATGGTCAACGATTACTGGCCACAGCTGCGGACGCTTCAAAGAAGACCAAACGAAACAGATAGAATGTGCAAGGCGCGACCTATACCGATACATGCATTATCACAACCGGTACAAAGCCCACACGGATTCTCTCAAGCAGGAAAGCAATCTTAAGGAAACAATTCAGGGCAAAATAGCCATCTCGGAAAATAAGGAGTCTAGAATAAAGGATTACAGCTGGGTGATAAATGGCCTGAGCCGGCTCTTCAGATCGCGGCGTGTTCTTTCTTACTCTTACCCGTTTGCCTTTTATATGTTTGGGGATGAGCTCTTCAAGGATGAGATGACTTCGCAGGAGAGGGACCTGAAACAAAACCTGTTTGAGGACCAGCAGCAGCAGCTGGAATCGAATGTGGAGAAGCTCTCCATGTTTTTGGAGAAGGATTTTCAAGATTTTTCAGATGAGGAGGTCTTGGAGAATATGAAGCATGTTATCAATCTCTCCTCTGTAATAGATAGACTCTGCAAGCAAATGTATCAATGCATAGAGAATGATCTGTTGTATCCCTTGCAAAGAGCAACCCACAATATTGCTCCTTATAAATCGAAGGGCCCTGAGAAGGCTTCAGAACTGTCAGACTGTTGGGTTTCTAACCAAGCCCGAAGTGGTAGGACCAATAAGATGGACGCCCTCCCTCACCACATTTCTGCTGTTAATACAAGCGGAGTGAGTCTGTTGGCAAAGCGTTCTTGGCAGTTTCACGCGGTCTCGAGCTCAGATGATAGCGAATCAGGCGGTGGCTCCTCGAGAAAGCTCCGCAGGAATGAACAGTCGATTGGGAGCACCCCACGTTTTGATTTGAACATGCCTGCTGCTGAAGTGGTTGAGAAGAGTTGAACTTCTTAGATGTAATGCTACTACCTCTGCATCCGCTCCCATATGTACAGCATTAAGTTAGAATTCCTCTTCTTTATTTATATAATATTTGTTTTTGGTGACCTCATGGTGAATGTATAAGTTTCTCGTTGGGGCATTCAGATAGACAATAATAATGTTTTGTAATTACTGTTTTTTTAACAGATTATACATGCACACGCATGGGAATATCAGTCTCATATGTTTAAATATATCACAATTTATATACCACTTATTGCATATTGTGGAAATCTTTTAGTTTGCCTTGG

Network for GWHGAAEX011175

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01485.20	IBR	204	265	5.90E-12
PF01485.20	IBR	281	323	8.80E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.960
SRP064423	SRR2545915	Juvenile tuber	51.010
SRP108465	SRR5643513	five period of Gastrodia elata	54.720
	SRR5643514	five period of Gastrodia elata	55.350
	SRR5643515	five period of Gastrodia elata	59.360
	SRR5643524	five period of Gastrodia elata	60.110
	SRR5643525	five period of Gastrodia elata	84.770
	SRR5643528	five period of Gastrodia elata	98.320
	SRR5643658	five period of Gastrodia elata	100.930
	SRR5643659	five period of Gastrodia elata	57.320
	SRR5643660	five period of Gastrodia elata	60.090
	SRR5643661	five period of Gastrodia elata	57.940
	SRR5643662	five period of Gastrodia elata	67.890
	SRR5643663	five period of Gastrodia elata	65.660
	SRR5643664	five period of Gastrodia elata	72.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.120
SRP279888	Gastro	Gastrodia elata tuber	70.94
	Juven	Juvenile tuber	69.05
	Mother_Gastro	Mother tuber of Gastrodia elata	81.84
	Mother_Juven	Mother tuber of Juvenile	104.25