Detail information of GWHGAAEX011176/evm.TU.scaffold_36.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310820200|ref|YP_003952558.1| | 1.00E-07 | set domain-containing protein [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG1721 | 4.00E-162 | FOG: Zn-finger |
| nr | gi|743873762|ref|XP_010906908.1| | 0 | PREDICTED: histone-lysine N-methyltransferase SUVR5 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|O64827|SUVR5_ARATH | 0 | Histone-lysine N-methyltransferase SUVR5 |
| trEMBL | tr|F6GX09|F6GX09_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB44495.1} |
| TAIR | AT2G23740 | 4.00E-162 | nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 428579 | 473240 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011176
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11722.7 | zf-TRM13_CCCH | 602 | 629 | 3.10E-06 |
| PF05033.15 | Pre-SET | 1315 | 1449 | 3.90E-12 |
| PF00856.27 | SET | 1468 | 1584 | 3.40E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0034968 | Biological Process | histone lysine methylation |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 60.230 |
| SRR2545915 | Juvenile tuber | 47.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.820 |
| SRR5643514 | five period of Gastrodia elata | 29.490 | |
| SRR5643515 | five period of Gastrodia elata | 26.240 | |
| SRR5643524 | five period of Gastrodia elata | 28.280 | |
| SRR5643525 | five period of Gastrodia elata | 40.490 | |
| SRR5643528 | five period of Gastrodia elata | 41.710 | |
| SRR5643658 | five period of Gastrodia elata | 48.910 | |
| SRR5643659 | five period of Gastrodia elata | 24.840 | |
| SRR5643660 | five period of Gastrodia elata | 27.810 | |
| SRR5643661 | five period of Gastrodia elata | 21.250 | |
| SRR5643662 | five period of Gastrodia elata | 25.400 | |
| SRR5643663 | five period of Gastrodia elata | 28.270 | |
| SRR5643664 | five period of Gastrodia elata | 29.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.29 |
| Juven | Juvenile tuber | 37.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.03 | |
| Mother_Juven | Mother tuber of Juvenile | 49.26 |