Detail information of GWHGAAEX011178/evm.TU.scaffold_36.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108761638|ref|YP_628824.1| | 4.00E-28 | metallophosphoesterase [Myxococcus xanthus DK 1622] |
| KOG | KOG2863 | 2.00E-167 | RNA lariat debranching enzyme |
| nr | gi|359492991|ref|XP_002283617.2| | 0 | PREDICTED: lariat debranching enzyme isoform X1 [Vitis vinifera] |
| Swissprot | tr|Q6AU07|DBR1_ORYSJ | 0 | Lariat debranching enzyme |
| trEMBL | tr|E0CNU7|E0CNU7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI19325.3} |
| TAIR | AT4G31770 | 2.00E-167 | debranching enzyme 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 819214 | 853458 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011178
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00149.27 | Metallophos | 1 | 229 | 1.30E-13 |
| PF05011.12 | DBR1 | 244 | 363 | 6.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006397 | Biological Process | mRNA processing |
| GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds |
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.100 |
| SRR2545915 | Juvenile tuber | 17.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.000 |
| SRR5643514 | five period of Gastrodia elata | 13.680 | |
| SRR5643515 | five period of Gastrodia elata | 11.930 | |
| SRR5643524 | five period of Gastrodia elata | 13.200 | |
| SRR5643525 | five period of Gastrodia elata | 10.960 | |
| SRR5643528 | five period of Gastrodia elata | 15.630 | |
| SRR5643658 | five period of Gastrodia elata | 14.950 | |
| SRR5643659 | five period of Gastrodia elata | 12.140 | |
| SRR5643660 | five period of Gastrodia elata | 9.690 | |
| SRR5643661 | five period of Gastrodia elata | 9.560 | |
| SRR5643662 | five period of Gastrodia elata | 10.920 | |
| SRR5643663 | five period of Gastrodia elata | 10.690 | |
| SRR5643664 | five period of Gastrodia elata | 11.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.27 |
| Juven | Juvenile tuber | 15.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.29 | |
| Mother_Juven | Mother tuber of Juvenile | 12.81 |