Gene detail

Detail information of GWHGAAEX011181/evm.TU.scaffold_36.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|22299445\|ref\|NP_682692.1\|	1.00E-64	endo-1,4-beta-xylanase [Thermosynechococcus elongatus BP-1]
nr	gi\|695001385\|ref\|XP_009415952.1\|	0	PREDICTED: uncharacterized protein LOC103996705 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P15718\|POLB_MAIZE	2.00E-06	Putative Pol polyprotein from transposon element Bs1
trEMBL	tr\|M0S2R4\|M0S2R4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P24570_001}
trEMBL	tr\|M0S2R4\|M0S2R4_MUSAM	4.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P24570_001}
TAIR	AT1G10050	0	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	944572	994347	-

Transcript Sequence
>GWHTAAEX011181 GAAGCGCACAGCTTCGAGTAAAGGCGAAACCTTTAAATCCACTTTTAATTTAACAATTTACCTGCATTGTTTTATAAAAATCGTTTAATTTTTCTCTATTGTGCGCTCAAACCACTTACCTTCCATTTAGACGACCAAGAACAAGGGGAAGAAGACAGCATTATCCCTCGGCATTATCCTTCTCCGAAATCTTGGCATGTTTTCTCATTTAAATTGAAAGTCCTTCTGATTTCGTACATGAAAAGGCTCCTCTCGGTTCTCTGTCTTAGGCGGCTGAGAAAGTCCAAGCGAACAGCCATCATCAGTTCCGATCCTGAGCCTGCCAGGGAATCCATGTCCAAGCCCCAGAATGGCAGCTGCTGTGCGGAGGGCAATGAGAGACGAAATGTACTGATTGATTTAGATGCTGAGCGGGCAACTAACATCATCTTCAATAACGACTTTTCTGAAGGGCTAAATTATTGGCATCCCAATTGTTGTCATGCCTATGTGGCACCCGAAGAATCTAATCTTCTCAATGGAGTTGCGGCACACTCAGGAGAGACTTACACTGTCATTACAAATCGCACAGAGTGCTGGCAAGGCTTGGAGCAGGACATCACTGGGAGAGTTTCCATTGATATTAAATATGACGTTTCAACTTTTGTTCGTGTGCACGGGAATCTACAGGGATCCTGTGTAGTGCAAGCAACACTTAGATTAGAAAATGCAGATTCTGCCATTAACTATTTATGCATTGGAAGAAAATCGGTTACCACAGAAATCTGGGAGAAGTTGGAAGGATCGTTTACTTTGTCAAGTTTGCCAAATCGTGTCATTTTTTATTTGGAAGGACCTCCTCCTGGAGTGGACATACTTATAAGAGCTGTTAATATCTGTCACACCAACTCTGAACGATCTGAGGAGACAGGAAGATGGATCCCTGATGGAAATGGAAACATCATTAGAAACTCTTTCTTTGAAGATGGTTTAAATAATTGGTCTGGTCGAGGTTGCAAAATACTTTTGCATGAATCTATAGGGGATGGGAAAATACTTCCATTACATGGAAGACGTTATGCTTCTGCCTGCAACCGCATTCAAAACTGGAATGGCATACAACAGGACATTACTGATAGAGTGCTTCGAAAAATTGCATATGAGGTGATTGCTATTGTTCGGATATTTGGAAATGCAGGTGTTACTGAAATTATGGCTAGTTTGTGGATCCAAGGGTCCAATGGACGTGAACAATACATATCCATTGGCAAAATTCAAGCATCAGATAAAGATTGGGTGAAACTGCAAGGAAGATTTCTATTGAATGGTCATACCTCAAAAGCTGTAATTTATCTCGAAGGACCACCATTGGGTACCGATATCCTTGTAAACAGTTTAGTTGTAAAACGTGCTGAAAAGCTTCTGCCTTCCCCTTTGCTTATGTTTGGAGGAAGTAAAGATGCCACTATTTATTCACCTTGTTCTTTTATCAATAACATTATCTCCAATCATGATTTTGCTCAAGGGCTACACTCCTGGCATCTCAATTCTTGCGATGGCTATGTGATATCCGGCGACTCTAGCTTATTCAAAGGAGTTTCTGCGTTATCCGGATCAAATTATGCAGTAATTACTAATCGCAAAGAAGTTTGGCAAGGCCCAGAGCAGGACATAACGAAGAGCATTTCACCTGGTTTTCATTATTCACTTTCTGCCTATGTGAGGATCGGTGCAGCCCAAGAGGAGGCTTGTCCAGTGATAGCTACGCTAAAACTTGAGCATTTAGATTTGACAAACTTTTTATTTATTGGGAGAGTTTTAGCATCAACAGAAAAATGGGAAAAGTTGGAGGGTTCCTTCACATTGTCAAGTATGCCTGATCGTGTAATATTATTCCTTGAAGGACCGCCTCCTGGACATGAATTGCTCATAGATTCTATTGTAGTGTCTCTCTCAAATTTGAAGAATTTTAAGAAAATACCTTTTGGAGTAAATATAATTGAGAACAGTAACTTTAATCAGGGGCTGAGCAATTGGAGCCCTCTCGGCTCATGCACCTTAAGATTAGCAACTGGTTCTCCCCGCTTGCTTCCCTCGTCAGCAAAGGATTCAATTGGCCTTCATGAACCACTGAGTGGCCGCTATGTCATCGCAGCTAATCGGACAGAAACCTGGATGGGCCCGTCCCAGGCTATTACGGACAAGCTAACCTTACACGTAACTTATCAGGTTGCTGCATGGGTTCGTGTTGGATCTGGCCAGGCAAGATGCCCCCAAAAAGTTAATGTAGCCCTTGGCGTGGACGGCCAATGGGTCAACGGCGGTAGCATCCAAGTTACTGACGACAGATGGGCTGAAATCATGGGCTCATTCAGAATTGAGAAGCAGCCATCCCAAGTTATGGTCTATGTGCAGGGCCCTTTGCCGGGAGCTGACTTGATGCTCGCTGGGCTCCACGTATTTCCTGTTGACAGGAAGTCACGCTTCGATGCTCTGAAGCAGAAAACGGACAAGGTAAGGAAGCGTGATGTCATCTTTAAATTCACAGGAATTGAAGACGAGAAAGCATTGAACACAACCGTCAAGATTAGACAAACCCGGAACAGCTTTCCATTCGGATCATGCATCAGCCGATCAAACATCGAAAACGAGGAGTTTGTTGATTTCTTCGTGAAGAATTTCAGATGGGCTGTCTTTGGGAATGAGTTGAAGTGGTACCATACGGAGCCCGAACGGGGATGTTACAACTATAGGGATGCTGACGAGTTGCTCGAATTCTGTAAGGAGCATGGAATTGAAGCTAGAGGCCATTGCATTTTTTGGGAGGTTGAGGATAGTGTGCAGCAATGGATTAAATCACTGGACAGAGACGATCTGATGAGTGCTGTTCAGAGTCGTCTGAAAGATCTTCTGTCGAGATACAAAGGTAGGTTCAGGCATTATGATGTGAACAATGAAATGCTTCATGGGTCCTTCTATAGAGATAGACTAGGTGAAAGCATTTGGGCCTACATGTTCAAAGAATCCTGCAAAGTCGACCCTTCGGCTGCACTTTTCGTTAACGATTACAATGTGGAAGATGGTTGCGATGCGAAGGCTTCTCCTGATATGTACATTCGTCAGATCCTGGAGTTGCAGGAACACGGTGCTTCCGTGGATGGGATCGGTTTGCAAGGGCATATCAGCAATCCCGTGGGGCAAATTGTGTGCTCCGCTTTGGATAAGTTGGCGGTTCTCGGTCTTCCTATTTGGTTTACTGAGCTAGATGTTGCTGCTGCTAATGAGCATGTCCGTGCCGAGGATCTGGAGGTCATACTTCGGGAGGCCTATGCGCATCCTGCTGTGGAGGGGATTGTGCTTTGGGGATTCTGGGAGTTGTTCATGTGTAGGGAAAATTCTCATTTAGTTAATGCTGAGAGTGACATTAATGAAGCTGGGAGGAGATATCTTGCTCTGAAGGAAGAGTGGTTGTCCCATGCTGATGGGCGCGTTGATGAAATCGGAGAATTTAAGTTCAGAGGGTATTATGGGACGTATACTATGGAAGTAACTACTCCATTGAAGACATCTTTTCAATCGTTTGTCATTGAGAAGGGAGAATCTCCACTATTGTTGCATATAGATTTGTATAAGCAGTAGTTGCTTAACAACATTGAGAATGTATGGCTTCTAGATGCTGGTGTTGTAATATGATATTGAATTTTATTAATGATTTGTTTGTTAATGGTGAAAACGTTAAGTTTATTTGGAGTTATTTTGTTAATTTATTTGATGTTAAACCGAACTTTAATCTTTCGGTTAATGCTTTCTTGCCTGTTTGCAGAATATCAGGAAAAAAAATGTAAAAAAACGGCTATATTAGAATTATTCTCTTTGCTCTCATTATTTGGCATATTTGGGAGGAGAGAAATAATTGTAAGCAGAAATTCTCTTTTTAAT

Network for GWHGAAEX011181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02018.16	CBM_4_9	62	200	2.40E-18
PF02018.16	CBM_4_9	233	369	2.50E-13
PF02018.16	CBM_4_9	412	550	2.70E-20
PF02018.16	CBM_4_9	579	721	1.10E-17
PF00331.19	Glyco_hydro_10	781	1037	8.50E-44

Protein Sequence

>GWHPAAEX011181
MKRLLSVLCLRRLRKSKRTAIISSDPEPARESMSKPQNGSCCAEGNERRNVLIDLDAERATNIIFNNDFSEGLNYWHPNCCHAYVAPEESNLLNGVAAHSGETYTVITNRTECWQGLEQDITGRVSIDIKYDVSTFVRVHGNLQGSCVVQATLRLENADSAINYLCIGRKSVTTEIWEKLEGSFTLSSLPNRVIFYLEGPPPGVDILIRAVNICHTNSERSEETGRWIPDGNGNIIRNSFFEDGLNNWSGRGCKILLHESIGDGKILPLHGRRYASACNRIQNWNGIQQDITDRVLRKIAYEVIAIVRIFGNAGVTEIMASLWIQGSNGREQYISIGKIQASDKDWVKLQGRFLLNGHTSKAVIYLEGPPLGTDILVNSLVVKRAEKLLPSPLLMFGGSKDATIYSPCSFINNIISNHDFAQGLHSWHLNSCDGYVISGDSSLFKGVSALSGSNYAVITNRKEVWQGPEQDITKSISPGFHYSLSAYVRIGAAQEEACPVIATLKLEHLDLTNFLFIGRVLASTEKWEKLEGSFTLSSMPDRVILFLEGPPPGHELLIDSIVVSLSNLKNFKKIPFGVNIIENSNFNQGLSNWSPLGSCTLRLATGSPRLLPSSAKDSIGLHEPLSGRYVIAANRTETWMGPSQAITDKLTLHVTYQVAAWVRVGSGQARCPQKVNVALGVDGQWVNGGSIQVTDDRWAEIMGSFRIEKQPSQVMVYVQGPLPGADLMLAGLHVFPVDRKSRFDALKQKTDKVRKRDVIFKFTGIEDEKALNTTVKIRQTRNSFPFGSCISRSNIENEEFVDFFVKNFRWAVFGNELKWYHTEPERGCYNYRDADELLEFCKEHGIEARGHCIFWEVEDSVQQWIKSLDRDDLMSAVQSRLKDLLSRYKGRFRHYDVNNEMLHGSFYRDRLGESIWAYMFKESCKVDPSAALFVNDYNVEDGCDAKASPDMYIRQILELQEHGASVDGIGLQGHISNPVGQIVCSALDKLAVLGLPIWFTELDVAAANEHVRAEDLEVILREAYAHPAVEGIVLWGFWELFMCRENSHLVNAESDINEAGRRYLALKEEWLSHADGRVDEIGEFKFRGYYGTYTMEVTTPLKTSFQSFVIEKGESPLLLHIDLYKQ

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH10
Carbohydrate-Active enzymes Family	CBM22

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0016798	Molecular Function	hydrolase activity, acting on glycosyl bonds
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.210
SRP064423	SRR2545915	Juvenile tuber	17.530
SRP108465	SRR5643513	five period of Gastrodia elata	10.800
	SRR5643514	five period of Gastrodia elata	12.250
	SRR5643515	five period of Gastrodia elata	12.070
	SRR5643524	five period of Gastrodia elata	11.330
	SRR5643525	five period of Gastrodia elata	9.870
	SRR5643528	five period of Gastrodia elata	7.100
	SRR5643658	five period of Gastrodia elata	10.640
	SRR5643659	five period of Gastrodia elata	12.510
	SRR5643660	five period of Gastrodia elata	12.820
	SRR5643661	five period of Gastrodia elata	10.930
	SRR5643662	five period of Gastrodia elata	9.830
	SRR5643663	five period of Gastrodia elata	12.290
	SRR5643664	five period of Gastrodia elata	11.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.440
SRP279888	Gastro	Gastrodia elata tuber	12.86
	Juven	Juvenile tuber	17.72
	Mother_Gastro	Mother tuber of Gastrodia elata	10.37
	Mother_Juven	Mother tuber of Juvenile	10.58