Gene detail

Detail information of GWHGAAEX011182/evm.TU.scaffold_36.28

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672133345\|ref\|XP_008790288.1\|	2.59E-136	PREDICTED: growth-regulating factor 6-like [Phoenix dactylifera]
Swissprot	tr\|Q6AWY3\|GRF6_ORYSJ	8.00E-92	Growth-regulating factor 6
trEMBL	tr\|M0TMQ0\|M0TMQ0_MUSAM	4.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P04970_001}
TAIR	AT4G37740	3.00E-56	growth-regulating factor 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	1074470	1097036	+

Transcript Sequence
>GWHTAAEX011182 AAACAGCATAATGACCGGGTTCATAAATTAGAGATGCGCTTGATTATTTTTCTCTATGATTTTCTATGATATACGGATGTGAAGTTGGCACTCACTGGTCAACACATCTGACTGCAAGTTGCATCCCCATAATTATCAATTCCCAATTAAAAAATCGTTTCCTGACCTTCATTTGTCTCTCTTTTAACAATTCCTAACCAAGAAGACGTTTCCCAGTTCTCGCCCTTCAATTATTTACTCAAAAACAGCAGTTTTCTTCAAAGAAAACCACTCTCTTCCGGATTTCTCCATCCAGCTTGCTATGCTTTTCCTCATCTCTTCGTTGCTCACCCCGCCTTCTGATGAACTCCAACTCTTCAAAGCCATCTACTTAGCTCACAGCTGAAATGGGTAGCACATTGTTTTCTGTCTCTTCTGATTCTAATGGTGTCTTTTCTTCCCCTTTCCCCTCTTTAGTGATGGAGCCCACCAAGCAAAGAGGCGATTTTGAATCTGGTCTCTTCTCCAAACATGGGAGATTAGCTTTGGGGGTTGAGGAAACTGATGAGTTGAATCATCTCAAGGTGATCAAAAGCGATCCGATGCTAATAGCGACTAGAAGAATGGAACCTTTCCACCTTTGGTCCAACTCATGCTCCCTATCATCTGATGGGGAGAGAATGCTAAGTTTTTCTTCACCAAGATCAGATGCCATGGCGTTCAGCAGCTGTGAAACCTTGCCTTGCCTTTGGAAAGCAGGAATGTGCCATGGACGCTATAATGTGGGCATGCATGGGACTATGGGTGGGTTTAAAGGATCGTTTACTCCGTCTCAATGGATGGAACTGGAGCAACAGGCTCTGATCTATAAATACATTGATGCGAAAATCCCAGTGCCATCAAATTTGGTCATCCCAATCAGAACAAGCCTCAATCCATCTGGCTTTCCTTCCTTCACTGCTGGATCTTATAGATCAGGGAAGTGGGGGTACGGGTCTTGTAATCTCGCTTTTGCGGGTAATGCCGATCCAGAACCCGGTAGATGTCGTCGAACTGATGGGAAGAAATGGCGTTGTTCCAGAGATGCAGTTGGTGATCAGAAGTACTGCGAGCGGCACATGAACCGTGGCCGCCATCGTTCAAGAAAGCATGTGGAAGGCCACAATGGCCATGCTGCAAAAGCAGCAATGCCTACCCCCTCACAATTGGGACCAACTGTTTCTGGTGGCTTATCTAGCCATAATCTAAGTGGAGCACATCAACAGCTGTGCAAGAGTTTGCAGGCAGGCATGGCAGAATCTTCACCTACACAGTTTGATAGGCTGCTTATGATCAAAGGGGCTTCAAGCGAACTAGCTCTTAACTCCCAAACCGCATCCGTTCAGACTAATTTTTGCCCAGAAGGTCCAGACGCCTTCCCCATCAGCAAACAGCAAACCTTTTATAATGGAACTTCGGTTGGCCCAGAAGCTTCACTCTCCTCATCTGATTCCTTATTTTGTGTGCCTAAGTCTGAAATGCATGATGATCAGCCCAAACCCCATCCCCTCCTTCATTTCATTGATGATTGGCCTAAAACCCAGTCTGAGCATCCATCCATGGCCTGGTCTGATATTGAAGAGATGCACACCGAGAGAACCCGACTCTCTATTTCCACCCCTGTGGGCTCTTCTCATCACTCTTCATCTTCTTCATCGCCCAACAAGCACAAGCTTGCTTTATCGCCTATTAGACTGCCCCGTGACAATAGGCATCCAAGTTGGACGCCCATTTCCTGGGATCCTATGCTAGGTGGACCTCTTGGGGAGGTTTTGACAAACAAGAGCCGGATTGCTGAGAACAATAGCAGGCATAGCTCATCATCACCCTTGAACTTGCTGACTGATGGCTGGGATTTGAGCCCGAGAGTAGAGTCATCGCCCACCGGAGTGCTGCAGAAAGCTTGCTTTGTTTCACTGTCAAGCAGCACGGCGAGCAGCCCGCGAACAGTGAGACAGAAGGCTCCTGAAGCTGACGAATTTGGCTCAACCTTCGTAAATCCTTATGATTAAGACAAACAGCAGCATGATCATCATGATGTGCTTTAATTAAAGGACTAACAAAAGATGAAGGAAACTATGAGTTCAAGGTCATATTTGTAATGTGTTGTTATGACTGGCTTTTAAATGTCCACCCAACTGTAGTATGAAACCGTGGAGAGGGTTTTAGATTGTGTAATGCTTGATTATCAAGCTCATGTGCTTAGTGATACTGTAGACATTATGATGAAACTTCTGATTAGGTTTTTCTTGAGGGTTTTGTTTGCATGCTTGACCTGGCCTTAACTAAAGGTAGAAAAATATATATTTTTACAATTATCTCGTAAGATAAATATGTAGCTCCTGATGTTTTTATAGGGAATCTTTTACCTTACTCCCAG

Network for GWHGAAEX011182

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.10	QLQ	138	172	9.00E-14
PF08879.9	WRC	208	250	3.40E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005524	Molecular Function	ATP binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.900
SRP064423	SRR2545915	Juvenile tuber	5.590
SRP108465	SRR5643513	five period of Gastrodia elata	16.930
	SRR5643514	five period of Gastrodia elata	14.300
	SRR5643515	five period of Gastrodia elata	13.480
	SRR5643524	five period of Gastrodia elata	16.510
	SRR5643525	five period of Gastrodia elata	5.440
	SRR5643528	five period of Gastrodia elata	6.460
	SRR5643658	five period of Gastrodia elata	3.860
	SRR5643659	five period of Gastrodia elata	8.700
	SRR5643660	five period of Gastrodia elata	7.050
	SRR5643661	five period of Gastrodia elata	8.300
	SRR5643662	five period of Gastrodia elata	6.490
	SRR5643663	five period of Gastrodia elata	7.310
	SRR5643664	five period of Gastrodia elata	7.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.470
SRP279888	Gastro	Gastrodia elata tuber	8.81
	Juven	Juvenile tuber	20.32
	Mother_Gastro	Mother tuber of Gastrodia elata	40.58
	Mother_Juven	Mother tuber of Juvenile	34.94