Detail information of GWHGAAEX011189/evm.TU.scaffold_36.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 2.00E-46 | MADS box transcription factor |
| nr | gi|300078686|gb|ADJ67240.1| | 5.46E-51 | MADS box transcription factor 10 [Oncidium hybrid cultivar] |
| Swissprot | tr|Q8GTF5|AP1A_BRAOB | 4.00E-47 | Floral homeotic protein APETALA 1 A |
| trEMBL | tr|D9IFM4|D9IFM4_ONCHC | 2.00E-51 | MADS box transcription factor 10 {ECO:0000313|EMBL:ADJ67240.1} |
| TAIR | AT1G69120 | 2.00E-46 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 1594579 | 1627823 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011189
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 1.20E-25 |
| PF01486.16 | K-box | 88 | 161 | 1.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.830 |
| SRR2545915 | Juvenile tuber | 15.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.610 |
| SRR5643514 | five period of Gastrodia elata | 18.930 | |
| SRR5643515 | five period of Gastrodia elata | 18.060 | |
| SRR5643524 | five period of Gastrodia elata | 19.080 | |
| SRR5643525 | five period of Gastrodia elata | 17.340 | |
| SRR5643528 | five period of Gastrodia elata | 23.400 | |
| SRR5643658 | five period of Gastrodia elata | 15.210 | |
| SRR5643659 | five period of Gastrodia elata | 38.950 | |
| SRR5643660 | five period of Gastrodia elata | 30.850 | |
| SRR5643661 | five period of Gastrodia elata | 29.090 | |
| SRR5643662 | five period of Gastrodia elata | 18.950 | |
| SRR5643663 | five period of Gastrodia elata | 15.490 | |
| SRR5643664 | five period of Gastrodia elata | 21.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.89 |
| Juven | Juvenile tuber | 67.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.10 | |
| Mother_Juven | Mother tuber of Juvenile | 47.85 |