Detail information of GWHGAAEX011192/evm.TU.scaffold_36.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 4.00E-45 | MADS box transcription factor |
| nr | gi|595649764|gb|AHM92087.1| | 4.18E-54 | MADS-box protein 11 [Erycina pusilla] |
| Swissprot | tr|Q0D4T4|MAD18_ORYSJ | 1.00E-48 | MADS-box transcription factor 18 |
| trEMBL | tr|X2F984|X2F984_9ASPA | 2.00E-54 | MADS-box protein 11 {ECO:0000313|EMBL:AHM92087.1} |
| TAIR | AT1G69120 | 4.00E-45 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 1944749 | 1980542 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011192
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 4 | 41 | 2.10E-15 |
| PF01486.16 | K-box | 70 | 154 | 3.30E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 99.310 |
| SRR2545915 | Juvenile tuber | 125.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 88.500 |
| SRR5643514 | five period of Gastrodia elata | 51.840 | |
| SRR5643515 | five period of Gastrodia elata | 90.460 | |
| SRR5643524 | five period of Gastrodia elata | 65.970 | |
| SRR5643525 | five period of Gastrodia elata | 0.170 | |
| SRR5643528 | five period of Gastrodia elata | 0.090 | |
| SRR5643658 | five period of Gastrodia elata | 0.200 | |
| SRR5643659 | five period of Gastrodia elata | 98.730 | |
| SRR5643660 | five period of Gastrodia elata | 115.460 | |
| SRR5643661 | five period of Gastrodia elata | 81.780 | |
| SRR5643662 | five period of Gastrodia elata | 10.580 | |
| SRR5643663 | five period of Gastrodia elata | 3.710 | |
| SRR5643664 | five period of Gastrodia elata | 10.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 65.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 64.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 63.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.60 |
| Juven | Juvenile tuber | 78.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.42 | |
| Mother_Juven | Mother tuber of Juvenile | 48.78 |