Gene detail

Detail information of GWHGAAEX011196/evm.TU.scaffold_36.50

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2635	Medium subunit of clathrin adaptor complex
nr	gi\|695013796\|ref\|XP_009393693.1\|	PREDICTED: coatomer subunit delta-2-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q0DJ99\|COPD2_ORYSJ	Coatomer subunit delta-2
trEMBL	tr\|M0SKZ7\|M0SKZ7_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P04300_001}
TAIR	AT5G05010	clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	2239753	2271984	-

Transcript Sequence
>GWHTAAEX011196 ATTCCCATCAGCCTCCTTATGCCGTGAGATTTAATCAGGCTAAATCGGATGGATGAAGGAGCAAGAGATGCTCTATACAAACCTTAGGCTTCCTTCACCTCAACCTGCTCCTCTTCGCCCTAGTCGCTGACTCTCTTCCTCTCCATCGGCCTCTGCCCAAACATTGCCCATCACCACGAGGGTCAAATCCGCCATCTGTCACCGGGCTTCTCTAACCATTTAAATCCTCTAATATGATGATCCCTCATCTACGGATTTGACGCAAACGCCAAATGACATTGCTCACCCTATATGCGCCTCTTCTTTGCTCAGGAGTCGCCGATCTTTTCCATTTTTCATCCCTTGCCGGCGACATTTTCAGATTGTTAAGGATAAGGTCATCGATAATCTCAAGGTTTTGATCTCTACATTCCTGACCTTCTCATCTTCAACAAATCCTTCACCACCCGATCTGATCGCAGTGAGGCCTTCCAGGGCGAGTGGCAGCATTTGATCGACAACTTTTGATCTGTAGAACTGAAACCATTTGGGAGGTGCTTTTGGTTGATTGAGGTTTCTGAGCCCGAAATAAAGGGAATCTATTTGTGTTTGTATCATTAATACTCATCTCTCATTTGTTCAAAATGGTGGTTCTTGCAGCATCCATCATAAGCAAATCTGGAAAGATACTTTTATCTCGACAGTTTGTAGACATGACCCGGTCTAGAATTGAAGGACTTCTTGCTGCATTCCCTAAGCTTGTTGGATCAGGAGGAAAGCAACACACATTTGTTGAGACTGAGAATGTTCGATATGTATATCAACCCATTGAAGCTCTCTATTTGCTTCTTATAACGAACAAGCAGAGTAATATTGTTGAAGATCTTGGAACTTTAACTTTGATGTCCAAACTTATCCCCGAATATGCATCCCCTTTAGATGAAGAAGGAGTTTTGAAGGCAGCTTTTGAGCTGATCTTTGTTTTTGATGAAACCATTTCTCTTGGTCGTAGGGAAAGCGTAACGATTGCGCAAGTAAAGCAGTATTGTGAAATGGAGAGTCATGAAGAGCGACTTCACAAGTTAGTAATGCAAAGTAAGATTAATGAAACTAAGGATGTTATGAAGAAAAAAGCCAGTGAGATTGATAAAAGCAAGCTTGATAAAAGTAAAGGTGATAAAGGCGGCTTTATGTCTATGTCTGGTCTTAAAAATTTTAATGATTTAAGTATCTCTAGTGGTAGCACTGCTTTTGGGGGTAGATCTGAACTTGGGGCTAGCACATTAGATCTGGATTCTTTTTCCAGCAAATCCAAAGGCCGGCCGGCAGCATCCGTCGCTGCTCCACCGAAAGGCCTTGGCATGAAACTAGGCAAAACGCAGCGTGAAAGCCAACTCATGCAATCTCTGCAAGCCGAAGGGGAAGTGATTCTTGATGATGTCACCCTCAGTGCGGCTGGACAAGCAAGATTATCTCTTCCGCCAGCTGATCCCATCACTTTGACCATTGAAGAAAGGCTTAATATTACAACCAAGAGGGATGGCGGCCTCAACAATTTTGATGTGCAAGGCACCCTCTCCCTGCAGATTCTTAATCAGGAAGATGGATTTATCCAATTCCAGATTGAAAACCAAGAGATGCCTGGCCTAAGCTTTAAAACCCATCCCAACATCAACAAGGAACTGTTCAACACTCGCCATATTATTGGCCTGAAGGATATAAACCGGCCATTCCCCGCAGGTCAGAACGACGTCGGGCTGATGAAATGGAGAATCCAGGGCATGGACGAGTCTTCGCTGCCACTGACCGTGAACTGCTGGCCTTCGGTTTCCGGGAGGGAAACTTCTGTGAACATCGAATATGAAGCCACAGACAAGTTCGACTTGCAGAATGTGGTGATCTGCATCCCCATTCCTGCTTCTCGGGAGCCACCAAATATATCGCAGATTGATGGGGAATGGAGGTTTGATGCTAGATCGTCAGTTCTGGAGTGGTCCATTTTTCTTATTGACAACACAAACAGAAGTGGATCAATGGAGTTCGTTGTTCCTTCAGCCGATTCTTCAGCCTTCTTTCCCATCACCATCCGATTTTCAGCGGCAAGGACATTCAGTGATGTCAAGGTTGTGAATGTGATGCCTGTGAAAGGAGGGGCTGCTGCTACGCCCCCAAAATACTCTCAGAGGATACAACTGGTCACTGACACCTACCAGGTTCTCTGATGATGAAGTTATCCTTCTAATGGTGAGACTAAGAAGCAAAAGCTTTGGAAGGATTTTTTTTAAATTGCTCTTTCCATCAATGGACCCTGGTGCATTCTTGAATATCTTAAATGTGTTAAATTCTACAATGAGGATGTTTTTTATTCTTGGCAATTGTAAACTCTTAATGACTGCATATTTTACTTTGCAAAAGTTCTTATTTTGTTTCTTTGTGGAAATCAAAGTCTTTCTTTTCTACAACTTGCTCTCAATTATGATAGAATTACAGTCCCCCAATGTTTGGCGTGCTTTTTTTT

Network for GWHGAAEX011196

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00928.20	Adap_comp_sub	282	502	2.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	87.280
SRP064423	SRR2545915	Juvenile tuber	108.810
SRP108465	SRR5643513	five period of Gastrodia elata	101.390
	SRR5643514	five period of Gastrodia elata	93.960
	SRR5643515	five period of Gastrodia elata	96.190
	SRR5643524	five period of Gastrodia elata	98.100
	SRR5643525	five period of Gastrodia elata	71.580
	SRR5643528	five period of Gastrodia elata	88.400
	SRR5643658	five period of Gastrodia elata	79.450
	SRR5643659	five period of Gastrodia elata	107.080
	SRR5643660	five period of Gastrodia elata	106.090
	SRR5643661	five period of Gastrodia elata	99.670
	SRR5643662	five period of Gastrodia elata	103.400
	SRR5643663	five period of Gastrodia elata	100.830
	SRR5643664	five period of Gastrodia elata	92.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	105.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	135.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	115.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	97.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	114.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	100.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	103.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	109.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	143.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	122.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	133.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	133.700
SRP279888	Gastro	Gastrodia elata tuber	118.32
	Juven	Juvenile tuber	132.06
	Mother_Gastro	Mother tuber of Gastrodia elata	98.51
	Mother_Juven	Mother tuber of Juvenile	125.82