Gene detail

Detail information of GWHGAAEX011207/evm.TU.scaffold_36.68

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1121	Tam3-transposase (Ac family)
nr	gi\|672196690\|ref\|XP_008776870.1\|	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Phoenix dactylifera]
Swissprot	tr\|Q6AVI0\|RSLE2_ORYSJ	Zinc finger BED domain-containing protein RICESLEEPER 2
trEMBL	tr\|J3LSJ3\|J3LSJ3_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB03G40190.1}
TAIR	AT3G42170	BED zinc finger ;hAT family dimerisation domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	2918464	2921150	-

Transcript Sequence
>GWHTAAEX011207 CTAGTGGGACTAAGGCTTAGTGTTTATTGTAGTAGTAGTTATTGTTGTCGCACATAAATGGATATAATAAGCATTATTCATTGTTAAATTGCATTGGCCCTCTGAGGACTCAGCAACACGTTTATCCTCAAGACTGTATACCAGAAAATTAATGCTTTACTTGTGAGGGTTTGTTAATTCCCAAGACTACTAAGGTACAATTTTTGCTTACCTATATTTAATTTTCTTTAATTGATCATCACCTGTTATCAGCTTTACAACTTAGTAATCTGTAATCATTTTAACATCTTACAACTACGTGATTGAATTATCTTCCGATTCCACACCAAGCTTAGAATATCATCACCTGTATGCATTAGAGTTAAACTTTTTGATTTTAAAAGATGAGATGAAAGTTTGACGTTCTCTTCAGCTAGTGCGGCTTCTCTTATTCATAGGCTATGGGTGGAGCCAGCGACACTGAAGAACAGCAGCTAACTTTAGAAATAGAAACAACGCCACAGCCCACACGGCGCAGGAAAAGAAAATCAATGGTATGGGAGCATTTTACTGTTGAAGCTGTCACCGGAGGATGTACACGGGCTTGCTGTAAGCTTTGCAAGCAAACTTTTGCATACAGCACTGGTTCAAAGATTGCTGGAACAAGCCACCTCAAAAGGCATATTGCTCTCGGATCTTGTCCTAAAATTAAGTCTCAAGATCAGCAGCAACTTGCACTCACTCCATCAGGTTTAAAGATGGACGGAGAATGCCCTGATCCTCCTAAAAGGCGTTACAGAACATCTAGTTATTTAAATGCTCAATTTGATACTGACATTTGCAATGAGAATCTTGCAAAGATGATAATCCTGCACGAGCTTCCTCTCCACATAGTTGAGCACCTGTCTTTTGTCACCTTTGCTCAGACTCTTCAGCCACGCTTCAAGATTATAACTTGTGAAGCCATTGAGACTGAAATCATGGCTGTTTATCAGAAGGAACGACATTATCTCTTGCAAGTGTTTGGGACTATGCTTGGTAGGGTTAGCCTCACTATAGAGTTATGGACGACCAGCCAGACGCTTGGATATGTTTGCCTTAACGGACAGTTCATTGACAGTGATTGGAAGTTGCATAGAAGAATGCTAAACTTCATGATGGTAACTTCCCCACATTCTGAAAATGCTTTGAGTGAAGTCATAGGCATCAGCCTCTCTGAATGGAACCTCAAGGACAAATTGTTTACCATAACATTGGATAATAATTGCTCATCGCATGACATCTACAGCGCAAATCTCAGAGATCATCTTTCCAACAAGAACACGCTCATGCTTAAAGGGCAGTTGTTTGTTGTTCGTTGCTATGCCAATATACTTAATGTTGTTGCTCAGGATATTATAGCTTCTATCCATGGGATAATCTACAACATCCGCGAGAGTGTAAAATTTGTAAGAGCTTCTCCTGCACGTGAGGAAAAGTTCACCGAGATATCTCTTCAGCTTGAGATTCCAAGCTCAAGGAACCTTAGCCTTGACATTACGACACAGTGGAACACAACGTACCACATGCTAATGGCAGCCCTGGAGTACAAGCAAGCATTTACGGTGCTGGAGACCTGTGATGATAATTACAACGAAGCGCCATCTGCTGATGACTGGAAGAAAGTTGAAGTGGTGTGCTCTTATCTGAAGCTTCTGTTTGACTCTGCCAGTACCATCTTGGCTGCAACCGATCCAACGTCCAATATGTTTTTCCATGAAGCATGGAAGATTCAGCTGGAGCTGAGTCATGCTGTTTCTAGCAATGATGCTGTGGTGAGTCGTGTTGCAAAAGATATGCACGAGAAGTTTGACAAGTACTGGAGAGATTGCAGCCTTGTCCTTGCAGTTGCTGTGGTTATGGATCCTCGGTTCAAGCTTAAACTTGTCGAATTCAGCTTCTCAAAAATATATGGGGAAGAAGCTGCTAGGTATGTCAAAGTGGTGAACGATAGCATTCATGAGCTCTATCTTGAGTACATCGCCCAACCACTCCCTCTGACCCCAGCTTTTGTGGAGTTTGGGGAAGCCAATGCTGCTGCCATCAATGGAAATGAGGGCAATCCTCCGGCCTCTCCGCTTTCAGTCATGGATGGACTCCATGATTTTGACATTTATATATCCGAGATATCTACCACCCAGACTACTAAATCAGAGATGGATCAGTATCTAGAAGAATCTCTTGTTCCAAGGATTCAAGAATTCGACATCTTAAACTGGTGGAAGCTTAATATTATAAAGTATCCCACTCTGTCGAAAATGGCACGGGATGTATTGGCCATTCCAATGTCCATGTTTGGTGCCGGCGGCTCCATGTTTAGCGCAGGGACTGGAAACCGAGTTCTTGACGAGTACAGGAGTTCTCTGCGCCCGGATATTGTTGAGGCCCTTTTCTGTGCAAAAGACTGGCTTCAGTATCTGCCCACAATGATGGAGCAGCCGTCTAATGCCATTGTGAAAATGGAAATGTAGGTTATGATGTGTGAATATTATATAGCTGTGCGGTTATTTGGTAGTCATGCATGAGTATGTAGCCGCCATCAGATCTGTTGTATCCAAAAATGGCAGGAATTTAGATAGGAAGTACTTGCCAAGCATTTATTTACTTGGGATGTATTTTGTTTTCAGTTCCCCAGTAAGTCCTATATTTATTATTAATTTTTTTTTTTT

Network for GWHGAAEX011207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02892.14	zf-BED	31	75	0.00023
PF14372.5	DUF4413	423	519	3.60E-33
PF05699.13	Dimer_Tnp_hAT	578	663	7.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.820
SRP064423	SRR2545915	Juvenile tuber	13.230
SRP108465	SRR5643513	five period of Gastrodia elata	8.300
	SRR5643514	five period of Gastrodia elata	7.670
	SRR5643515	five period of Gastrodia elata	8.160
	SRR5643524	five period of Gastrodia elata	7.040
	SRR5643525	five period of Gastrodia elata	9.200
	SRR5643528	five period of Gastrodia elata	9.650
	SRR5643658	five period of Gastrodia elata	10.040
	SRR5643659	five period of Gastrodia elata	10.520
	SRR5643660	five period of Gastrodia elata	10.450
	SRR5643661	five period of Gastrodia elata	11.170
	SRR5643662	five period of Gastrodia elata	14.380
	SRR5643663	five period of Gastrodia elata	11.900
	SRR5643664	five period of Gastrodia elata	12.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.330
SRP279888	Gastro	Gastrodia elata tuber	11.18
	Juven	Juvenile tuber	11.62
	Mother_Gastro	Mother tuber of Gastrodia elata	8.84
	Mother_Juven	Mother tuber of Juvenile	5.82