Gene detail

Detail information of GWHGAAEX011215/evm.TU.scaffold_36.77

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262196624\|ref\|YP_003267833.1\|	2.00E-23	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOG	KOG0118	1.00E-49	FOG: RRM domain
nr	gi\|672125150\|ref\|XP_008785986.1\|	3.44E-56	PREDICTED: glycine-rich RNA-binding protein 10-like [Phoenix dactylifera]
Swissprot	tr\|Q9FNR1\|RBG3_ARATH	3.00E-50	Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBL	tr\|M0TY68\|M0TY68_MUSAM	3.00E-54	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P07090_001}
TAIR	AT5G61030	1.00E-49	glycine-rich RNA-binding protein 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	3374384	3395330	+

Transcript Sequence
>GWHTAAEX011215 CGGTGACGGACGCTGAAAGGCAAAGCTTGGGCTAATCTTATCGCACACCAACGGCAAGGATAAATCCTTTCCCATCAACATTTTCTTAAATATTGAGGTGTCAGCCATAAAACCTTCTCGGGCTGAACCAGGTGTGTAGGGTTTTAAGCCAAGCAAATTAAGAAGAGGAAGAAGGGAGGCGCTTGAAAGTTTCGAGTAATGGCTTTTGCCAATAAAATTGGGAGTCTTCTCAAACGTGCAACATTGCCTTGTCCGTCAATCTACCAATTAGTGAGATGCATGTCTTCATCAAAAGTTTTTGTTGGAGGGCTTTCATATGCCACAGATGATCAAACTCTAAGGGAAGCATTCTCTGGCTATGGTGAAGTTGTTGAGGCTAGGGTCATCCTTGATCGTGAGACTGGGAGATCAAGGGGTTTTGGCTTTATAACGTTCACTTCTGGGGAAGAAGCTTCGGCTGCAATTACTGCCTTGGATGGAAAGGATCTTCATGGGCGCTTAATTAAAGTGAACTATGCCAATGATCGTCGTCCTGCTTATGGTGGTGCTGGTGGAGGTTATGGCAGCAGTGGTTACGGTACGGGCAGCCCTGGTGGCGGCTATGGAAACAGTGGTGGGGGCTACTACGGTGGTGGGAACTATGGAGGCGCTCCTGCGGGTTACGGTGGAGATAGCTATGGAAGCGGAGGTGGCAATTATGGAGGCGCTCCTGCGGGCTATGGTGGAGATAGCTATGGAAGTGGAGGCAGCAGTTATGGTGCTCCTGCGGGCTATGGTGGAGATAGCTATGGAAGTGGAAGCGGCAATTATGGAGGTGGAGGTGCTTCTGCAGGCTTTGGAGGAGGTGCTCCTGCAGGCTATGGTGGAGACAGCTATGGAAGTGGAGGCAGCAGTTATGGCAGTGGTAGCGGTGGTGGGGGAGGCTATGGTGCTTCTGTTGGTGCACCTATTGAAGGCGGAGATGGCAGAAGTGGAATTGGTGGTTATGGCAGTGGAGGTAGTGCACCTATTGGAGGTGACAACTATGTTGCCGGAGGTGTTGGTGAGAGCGAGAACTATTTTGGCAGCAGTGCAGCTAAACAGAACTTTGGCGGAAGCAATAATTTCAGCAAGGTGGATGATCGCAACAACTCAAATGGATTCAACAACTATGGCAATCAGGAGGATGACTTTGATGAACCTCTCAAGGATGATTTTGATGACTTTGCAGGCAAGAGATGAGTTTTCTACCGAATTGAGTGAAAGATGGAATGCTAAAATCAAATTCTTCGTGTTCTAATAATAAACAAAAAACATGTATTGCATTGTTTATGAATTTTGAACTTGCTGCTATAGCTGCTGATCGATAGGTGTTTGATTATACTGTATGCATCTTTGTTTCCTATCTTGTGTTTTATTTTTTTTGGTATGTAGCTTCTTTATTATTCTCAGCGCACATTCTGAATGGTAATTGTCTTCATTTCTTCCAGTCAATTTTTTGTTATCATAGAAAAATTGCATATCCTTGCTCGAAGACCTGAG

Network for GWHGAAEX011215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	33	103	3.00E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	72.210
SRP064423	SRR2545915	Juvenile tuber	68.770
SRP108465	SRR5643513	five period of Gastrodia elata	145.090
	SRR5643514	five period of Gastrodia elata	159.470
	SRR5643515	five period of Gastrodia elata	137.320
	SRR5643524	five period of Gastrodia elata	163.040
	SRR5643525	five period of Gastrodia elata	109.740
	SRR5643528	five period of Gastrodia elata	105.730
	SRR5643658	five period of Gastrodia elata	75.060
	SRR5643659	five period of Gastrodia elata	142.610
	SRR5643660	five period of Gastrodia elata	146.450
	SRR5643661	five period of Gastrodia elata	146.400
	SRR5643662	five period of Gastrodia elata	149.990
	SRR5643663	five period of Gastrodia elata	150.290
	SRR5643664	five period of Gastrodia elata	152.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	102.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	106.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	121.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	96.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	93.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	90.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	110.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	89.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	139.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	132.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	151.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	151.470
SRP279888	Gastro	Gastrodia elata tuber	111.15
	Juven	Juvenile tuber	141.49
	Mother_Gastro	Mother tuber of Gastrodia elata	69.89
	Mother_Juven	Mother tuber of Juvenile	101.62