Gene detail

Detail information of GWHGAAEX011216/evm.TU.scaffold_36.78_evm.TU.scaffold_36.79

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1960	4.00E-114	Predicted RNA-binding protein, contains KH domains
nr	gi\|672110232\|ref\|XP_008794223.1\|	0	PREDICTED: protein RIK [Phoenix dactylifera]
Swissprot	tr\|Q32SG5\|RIK_MAIZE	3.00E-143	Protein RIK
trEMBL	tr\|M0T9V4\|M0T9V4_MUSAM	2.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P24580_001}
TAIR	AT3G29390	4.00E-114	RS2-interacting KH protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	3395595	3410541	-

Transcript Sequence
>GWHTAAEX011216 CATATTAAGGCCCTAATTGTGCCGCGGATCTTTTCAACTTCCTTCATGAACTAAGAAGTCTTGCGCATTTGAGATGCAGTCGTCGTACCCTTGAACTTCAAAGCCTCCCTCCCTTTGATCTGTTGTCACTCAGCGATCCTGTGACGAATCCCTTCTCCTTCTGCTCTTGCTGTCGCGGTCATTCTTCTCGGGCAACCTTTAAACCGAAGAACACATTCGCTCGAGAATGGCCGACGGTCATGTTGGAACGAAGCCCCCAGATGAGTCAGCCGTAGCTGCAAGCGTCATGCGGCAAAGGAAAAGGAGAAAATGGGATGAACCTGCTGATTTTTTTATTTCTCCTGGAATATCTGTAGCTGGGGCTATTACTATGGGATTTGGCAGCACCATTGGTATTTCCACTCCAGGAGTTCTTCCACTTTCTAATGCTATTGCAGCAAGCACAATAGTACCATCAATTACTCCGAGCGCTACCTCACTTGTACAGAAATTATGCCAGTCGAAGGCTCAGGATGAACTTATAGCTCGAGAAATAGTAATAAATGATGCTGAACCAACTATTCGATACAAGCTTACAAAGCGTCAAACACAAGAAGAGATTCAGAGAAGCAGTGGCGCTGTTGTTATCACTAGGGGAAAGTATCGTCCGACTAATGCTTTGCCGGATAGTGAAAAACCTCTTTATCTTCATATTTCTGCTGGATCTCATTTGAAAGACATGGCGGAACGAATTACAGCTGTTGACCGTGCAGCTTCTATGGTTGAGGAAATAATTCGGCAAGGACACAACTTACCATCAACTTCTAGTCCTTGCACTGCTTTTAGTAGTGCAGTACAGGCAAATCAGCCTCTGAGCACTTGCTTATTCTTAGGCTTTGAGCCTGATCCATCTCAAAACATTGCAGCTCGCATTAGAGGACCTAATGATCAGTATATAAATCACATTATCAATGAAACAGGAGCGATTGTTATGCTGAAAGGGCTTGGTTCTGGCAATCTTGCCATTTCTCATGGTGAAGAAGGTATGGTGTCACATTATGAAGATGATCAGCAACCACTGCATTTATATTTGTCTAGTACGAATTCCAAGAGTCTTGAAGCTGCAAGGAACTTAGCTGAAAATCTTTTGGATACAATATCTGCTGAATGTGGTGCTTCCAGGGTTTCAAGCAAGGTATACGGTGCTGTTCCTCCCCCACAACAGTTGTTGCTTGGAGTCACAAGCTCTACAAATATGGGAGTGTCTGATAATCCGGTTGGTAGTTCATCATGTGGTGTTGCAGGGACTATGCAAACAGCACAATCCCTTGTATCTAGTACATTGGTAGGATCCTCTGTGTCCACTATAAGAACACAGAATGGGAACCTGGCTAAATGTGGAACTTTTTTACCAAACTCAAAAAGCTATGCTTTACCAATATCAACTGGAGGAACGTGTTACAGTGGATATGGAGGGATATATCCCCAGGCCACACCGTTGCAGCAGGTTGCTCTAGCACTCAAACAGGCTCCTGTTTCAACAATTTCTGCTGTTTCTTCGACAACTTCACAGGCAAGTACATTGGCAAAGATGACTCCGAATTTAAATGCTGATACCAAAAAACGACCACCTCACAAGAGGAAATTCCAAGAGCTTCCAGTTGTTTTAAAGGAGCTGCCAACACTTTCTAAGAGCTCACGACAGGGATCAGAATGTTTTAATAAGCCAGGTTTAGAGGATGCTGATGCAGGAAAATTTTCATTCATGCCTCCGCCGAAGAAGCTGAACCATCCTGCATTTGGGAAGATGCCGATGCCACCTGCGCCTCCGCCGCCCCCATATTCAATAAATATACCTCCCCCACCACCGAAGTTTCCATCCACTTCTGATAACAATAATTTAAGGGAAAGGATGCCTCCATCAAAGTCTCCATTATCCCTTGCAGCAGATGCCCAAACTACTGATGCTGCTGCTGTCCGGAGCAGCTGGGTTACAGAGAAAGCTGCCACTGAACCAATTTCTGGTGCTTTATTGAAGCTAGTTGAGTATGAAGAAGAGGAGGAAGACATGGTTGCCTCTGCTGAAGAATCCTGCAGAAGCAATGTGATGAGAAGCAGCAGCTCAAAGCCGTTTTGGGCTGTGTAATTATAACGCACAATACTTGTTGAAATTCCTCTTTATTCTGCTATACCCCTTCAATGTTTGGCAGAAATTTTACTTTGGATGCGATGAAGCCGCCTTTTGGCCATCGTTCTGGCTAACTCACGTTTCATGAATGAGGATGTTTTTGGCAAATTAATGCTATTTTGTAACATTCCATTGATCTGAAAAGTAACCAACAATTAATACTATACCTGTGGCTGCATTCCTAAAAGATATTCTTTTCTATTTTTCACCAAGAAATTCAACTGCTTATGGAGGCAGTCG

Network for GWHGAAEX011216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.040
SRP064423	SRR2545915	Juvenile tuber	29.260
SRP108465	SRR5643513	five period of Gastrodia elata	31.310
	SRR5643514	five period of Gastrodia elata	35.920
	SRR5643515	five period of Gastrodia elata	38.710
	SRR5643524	five period of Gastrodia elata	36.900
	SRR5643525	five period of Gastrodia elata	36.280
	SRR5643528	five period of Gastrodia elata	28.790
	SRR5643658	five period of Gastrodia elata	32.710
	SRR5643659	five period of Gastrodia elata	34.850
	SRR5643660	five period of Gastrodia elata	37.560
	SRR5643661	five period of Gastrodia elata	35.360
	SRR5643662	five period of Gastrodia elata	37.880
	SRR5643663	five period of Gastrodia elata	38.990
	SRR5643664	five period of Gastrodia elata	40.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.020
SRP279888	Gastro	Gastrodia elata tuber	43.38
	Juven	Juvenile tuber	30.01
	Mother_Gastro	Mother tuber of Gastrodia elata	69.75
	Mother_Juven	Mother tuber of Juvenile	52.11