Gene detail

Detail information of GWHGAAEX011220/evm.TU.scaffold_36.83

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338740701\|ref\|YP_004677663.1\|	7.00E-07	HflC protein , modulator for HflB protease specific for phage lambda cII repressor [Hyphomicrobium sp. MC1]
KOG	KOG2962	3.00E-168	Prohibitin-related membrane protease subunits
nr	gi\|293331751\|ref\|NP_001168508.1\|	0	hypothetical protein [Zea mays]
trEMBL	tr\|C0P654\|C0P654_MAIZE	0	Uncharacterized protein {ECO:0000313\|EMBL:ACN28470.1, ECO:0000313\|EnsemblPlants:GRMZM2G054020_P01}
TAIR	AT2G03510	3.00E-168	SPFH/Band 7/PHB domain-containing membrane-associated protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	3697500	3717945	-

Transcript Sequence
>GWHTAAEX011220 TTATCTTGCGGTAACTAACAGCTTAACCTCATACGCTGCCAACAGTTTGGACCGAGCTTTTACCCACTAATCTTTGTCTATTTCTCTGCAACTTCATCTCTGCTGTACGGAACATCGTCAGGAGTTGTGCTAATCTGTTTCTTGGAAGAACCATGGAGACGCAGACTCCTCCACGACCACAGCCACAGCAGAATAGGCAGGAACAACGGAATCCTCCTTCGCCGGATGCCAATGCCTTGACGTTTTTGTTGTTTGTAGTCATTTGCATCTTTTTTGCACTAATTTTTCTTTCGATTTCATTCTCAACAAATGGAAATAATTCTGTATTGCATCAAGTTCCTGAGGGTCATGTTGGTGCATACTGGAGGGGTGGTGCTTTATTAAATTCGATCACTGATCCAGGCTTTCATTTGAAATTGCCATTTATCACCCAATTTGAGCCGATTCAAGTTACTATTCAAACAGATCTGGTACGAGATATTCCTTGTGGAACAAAAGGCGGAGTCATGATCAGCTTTGATAAGATAGAGGTTGTGAATCGTCTTAAAAAGACATATGTGTACGACACTCTTCTCAATTATGGTGTAAATTATGATAAGACATGGATATATGACAAGATTCATCATGAGATCAATCAATTTTGCAGTTCTCATACATTACAACAAGTGTATATTGATATGTTCGATCAAATTGATGACAAAATGAAAGAATCTATTCAAAAAGACTGTACACAGTATGCCCCAGGGGTTGAAATTATCAGTGTTCGTGTTACAAAACCTAATATTCCTAAAATCATTCAGCGTAATTTTGAACTTATGGAAGAGGAACGCACTAAGGCTTTAATTGCCATAGAGGCCCAAATGGTGGCAGAGAAGGAAGCGGAGACCCTAAAGAAAATAGCTTTATCTGAAGCAGAGAAGAATGCCCAAGTTAGCAAGATACTTATGGAGCAGAAATTAATGGAAAAGGACAGCGCAAAGCAGCAGGAAGCTATTGAGAATGAAATGTACATTGCTCGTGAGAAAAGCCAAGCGGACGCCAGCTTTTACAGGGTGATGAAGGAAGCAGAAGCCAATAAACTGAAGCTTACGCCCGAGTTTCTTGAGCTCAGATTCATTGAAGCCATTGCGAACAATTCTAAGATATTCTTTGGGGAGAAGGTTCCTAACATGGTTTTTGATCAGAGACTCCTTGGTAATTCTTTTGATGGATTCAATCGGAAGGATCATTGAGAGATGAGCTGAATTTCACAATTTTTTATAATTAAAAAGCCTCATTGGATTGAAGGGGCTTTTTCTCACATATTTTTTACTAGTTTGTGGGCATATTTCCATTGCATTCGTGTTTGGCTTGAAAGTGTTACTAGTTTGGAAGTCTATTCGTATATTTTCATTGCCGTCATCATCATTATCATCGATTTTCTTGAGTTTTCTATTTGTATAATCTATTTTATGTTTAATTAAAATTTTGATCTTGCTCTCTAATATTTATAACCATTTATTTTATTCATTATAAAATTTGAACATAAAACTAATTAGCATTTGAATTTGTTAGCAATTGCAAATCAAACTCAAAGTTGTATATTCTTTCAT

Network for GWHGAAEX011220

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01145.24	Band_7	61	243	3.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031625	Molecular Function	ubiquitin protein ligase binding
GO:0005783	Cellular Component	endoplasmic reticulum

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	81.760
SRP064423	SRR2545915	Juvenile tuber	80.920
SRP108465	SRR5643513	five period of Gastrodia elata	72.540
	SRR5643514	five period of Gastrodia elata	79.080
	SRR5643515	five period of Gastrodia elata	72.870
	SRR5643524	five period of Gastrodia elata	68.780
	SRR5643525	five period of Gastrodia elata	69.610
	SRR5643528	five period of Gastrodia elata	72.220
	SRR5643658	five period of Gastrodia elata	58.030
	SRR5643659	five period of Gastrodia elata	55.410
	SRR5643660	five period of Gastrodia elata	51.850
	SRR5643661	five period of Gastrodia elata	52.350
	SRR5643662	five period of Gastrodia elata	50.390
	SRR5643663	five period of Gastrodia elata	53.320
	SRR5643664	five period of Gastrodia elata	41.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	62.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	67.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	67.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	62.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	83.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	78.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	82.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	82.880
SRP279888	Gastro	Gastrodia elata tuber	53.27
	Juven	Juvenile tuber	44.96
	Mother_Gastro	Mother tuber of Gastrodia elata	102.61
	Mother_Juven	Mother tuber of Juvenile	82.50