Detail information of GWHGAAEX011221/evm.TU.scaffold_36.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307153410|ref|YP_003888794.1| | 8.00E-89 | tryptophanyl-tRNA synthetase [Cyanothece sp. PCC 7822] |
| KOG | KOG2713 | 1.00E-108 | Mitochondrial tryptophanyl-tRNA synthetase |
| nr | gi|743819703|ref|XP_011020941.1| | 7.56E-135 | PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X1 [Populus euphratica] |
| trEMBL | tr|K4DH58|K4DH58_SOLLC | 5.00E-135 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc12g095850.1.1} |
| TAIR | AT2G25840 | 1.00E-108 | Nucleotidylyl transferase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 3734570 | 3790516 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011221
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00579.24 | tRNA-synt_1b | 61 | 284 | 2.70E-68 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01867 | WARS, trpS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0006436 | Biological Process | tryptophanyl-tRNA aminoacylation |
| GO:0004830 | Molecular Function | tryptophan-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.450 |
| SRR2545915 | Juvenile tuber | 3.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.340 |
| SRR5643514 | five period of Gastrodia elata | 3.180 | |
| SRR5643515 | five period of Gastrodia elata | 2.050 | |
| SRR5643524 | five period of Gastrodia elata | 2.600 | |
| SRR5643525 | five period of Gastrodia elata | 2.480 | |
| SRR5643528 | five period of Gastrodia elata | 3.020 | |
| SRR5643658 | five period of Gastrodia elata | 3.130 | |
| SRR5643659 | five period of Gastrodia elata | 1.720 | |
| SRR5643660 | five period of Gastrodia elata | 2.330 | |
| SRR5643661 | five period of Gastrodia elata | 2.210 | |
| SRR5643662 | five period of Gastrodia elata | 2.080 | |
| SRR5643663 | five period of Gastrodia elata | 2.010 | |
| SRR5643664 | five period of Gastrodia elata | 2.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.36 |
| Juven | Juvenile tuber | 2.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.24 | |
| Mother_Juven | Mother tuber of Juvenile | 3.19 |