Detail information of GWHGAAEX011222/evm.TU.scaffold_36.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|254294417|ref|YP_003060440.1| | 4.00E-09 | 30S ribosomal protein S11 [Hirschia baltica ATCC 49814] |
| nr | gi|372450232|ref|YP_005090385.1| | 1.42E-52 | ribosomal protein S11 (mitochondrion) [Phoenix dactylifera] |
| Swissprot | tr|Q19VB6|RR11_CHLAT | 2.00E-07 | 30S ribosomal protein S11, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01310} |
| trEMBL | tr|G9HNU5|G9HNU5_PHODC | 5.00E-53 | Ribosomal protein S11 {ECO:0000313|EMBL:AEM43925.1} |
| TAIR | AT1G31817 | 2.00E-27 | Ribosomal L18p/L5e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 3791541 | 3791900 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011222
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00411.18 | Ribosomal_S11 | 19 | 110 | 3.70E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02948 | RP-S11, MRPS11, rpsK | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.530 |
| SRR5643514 | five period of Gastrodia elata | 0.400 | |
| SRR5643515 | five period of Gastrodia elata | 0.940 | |
| SRR5643524 | five period of Gastrodia elata | 0.400 | |
| SRR5643525 | five period of Gastrodia elata | 2.000 | |
| SRR5643528 | five period of Gastrodia elata | 1.050 | |
| SRR5643658 | five period of Gastrodia elata | 0.800 | |
| SRR5643659 | five period of Gastrodia elata | 0.800 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.470 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.56 |
| Juven | Juvenile tuber | 0.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.50 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |