Gene detail

Detail information of GWHGAAEX011223/evm.TU.scaffold_36.88

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672161585\|ref\|XP_008800615.1\|	PREDICTED: OBERON-like protein isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q84N38\|PVIP_NICBE	OBERON-like protein
trEMBL	tr\|M0RZB9\|M0RZB9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P12610_001}
TAIR	AT5G48160	Protein of unknown function (DUF1423)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	3911084	3931823	+

Transcript Sequence
>GWHTAAEX011223 AAACCCTTTTGTCTTCGTAAATCGTTAACTGCCCCCATAGGTTTTATGCTGAGCTTTGATCAAAACTGCTTTTTCTTTGACAGAGATCAAGCTTTGGCAAGTTGGTCTTGGTGGAGAGTATGGTATCGCCTTTCAGGTTCGAAAGATTTCCAACTTAAATCGGCACTTCTTTGTGCACTTTTTCAATAAGCCATAGCCAAAAATGTTACCTCCTCGTCAGCACCCACGGCCGTCAGGGCTGCAAACTTCTCTATCCCTAGCTTCGTCTGATGCCAATGAATCCCATGAATTGCTGGAGCCATTATCCATCTCTGACCAAGCTAATGACTCCCCGTCTGACAGCACGAGCTCTAGGGAAACATGGCCAATTGAGACTGGTCGCTCTAATGGTGTGATTATTAAGAGTGCTGACAAAGAGCAAGGGGAGAGTGGGTTCCCGGAGCCACAGGTCATCCGCCGAATTTCAGACACAGATAAATTGTCCCTTCGGGAGGTCGCTCGCGAGAGAATTGAGATTGTTTCCGATAGAATGGCCATGGCTCCCAACGAGCTGTTGGAAGAATTGAAGGCTGAGCTAAGAGTTATCCTTGAAGGAACTGGAGGGCATCAGCACAGGGACGAGTTCTTGCGCCTGCAACAACTCGTACAAGGTCGAGGTGATCTGACGGCAAAAAGTCTTGTGAGGGCTCATAGAGTGCTGTTAGAGATTCTAGTTTCGATCAACACAGGAATTATTGCTTTCCTGCACCCAAATGTCAGCCTTTCACAAAGTCGCCTTATTGAGATTTTTTTGTACAAGAGGTGCAGGAACATAGCTTGCCAAAGTGCTCTTCCGGCTGATGATTGCACATGCGAGATTTGTTCTCGTAGAAATGGCTTCTGCAATCTTTGCATGTGCGTGATTTGCAGCAAGTTTGATTTTGATGTCAATACTTGTCGTTGGATTGGCTGTGATATTTGTGCCCATTGGACGCATTCAGATTGTGCTATGCGTGCCTGCCAGATTGGTATGGGACCATCTGCTAAGAGTATCATAGGGCACAGTGAGATGCTTTTCAGGTGCCCAGCTTGCAACAGGACATCTGAGTTGTTAGGTTGGGTGAAGGATGTATTTCAGCACTGTGCATCAGGATGGGACCAAGAGGCCCTGCTGCGTGAGCTTGAATTTGTCACTCGGATTTTTCGTCTCAGTGAAGATGCCAAAGGAACCAAATTGTATTGGAAGTGCAGTGATCTTATTGAAAAGATCAAGAGTGGTGCTACAGAGTCCACAACATGCAGGATGCTGTTGCTGGTTTTTCAAGAGCTTGAGATAGAATCCAACAAGAATAATGAAAATGAGGACTCCGGGCGTGTAATCTCTCCACAGGAGGCTTGCAATCGGATAGCAGAGGTGGTTCAGGAGGCTGTAAGGAAGATGGAGGTGGTTGCGAATGAGAAGCTACAGATGCTTAAGAGGGCAAGGCTTGCAGTGGAATCCTGTGATCGGGAGCTCGAGGAAAAAGCTAGGGAGGTCACAGAATTCAAAATGGAGAGGCAGAGGAAGAAGCAGCAAGTGGAAGAGCTTGAAAGCATTGTGAGGCTTAAGGAGGCTGAGTCTGATATGTTCCAAGTCAAGGCAACAGAAGCCAGGCAGGAGGCTGAGAGGCTGCAAAGCATTGCCCTTGCAAAAAATGAGAAGGCAGAACAAGATTATGTAAATATGTATCTCAAGCGGCGTCTTGTTGAGGCTGAAGCTGAGAAGCAGTATCTCTTTGAGACGATGAAGCTTCAGGAAAGCCAACGAACTCTGCATGGAAGTAGCATAGGTGGCAGTGGCAGCGCTGGAGCAAGCAAGGAACCCTCACAAACCTTGATGTTGAGCAAAATCCAGGACTTATTAAAGAATGTGTACAATGTTGCTCCAAAAGCTGAAGGGCAATAACCAAAGTGAACGTATTCTTAAGTCAAGATAACTTTTACTTCAGGTAGGCCTTCTCGGTCTACCCTTTATCAACATATATTGATGGTATAGGTCTTACCTGTTTGTTGTAGCTGCTTCTTGTGTGGCTTTTGAGACCAAACCGATATTGCTCCTTTGCTTGCTTTTAGTGTCAGTTTGATTAGTAAACTTTTGTGCTTATTCATCCATCGATTGTTCAGATGCAGTTGTAACTCTCAAGTGCAGTTAAACTGCTTATAAAGTTGTATAATCCTTATTCATCAATCGATTGTTCATGATGCACTTGACATTTTCTTTTATTTTATATGATGCCCGTTTATTAATTTTCCAGACTTTCTTCTCTCTCCGGTG

Network for GWHGAAEX011223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07227.10	PHD_Oberon	201	324	2.30E-38
PF16312.4	Oberon_cc	418	560	1.40E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.690
SRP064423	SRR2545915	Juvenile tuber	31.770
SRP108465	SRR5643513	five period of Gastrodia elata	42.980
	SRR5643514	five period of Gastrodia elata	38.560
	SRR5643515	five period of Gastrodia elata	35.600
	SRR5643524	five period of Gastrodia elata	40.750
	SRR5643525	five period of Gastrodia elata	60.000
	SRR5643528	five period of Gastrodia elata	48.510
	SRR5643658	five period of Gastrodia elata	57.200
	SRR5643659	five period of Gastrodia elata	41.000
	SRR5643660	five period of Gastrodia elata	40.290
	SRR5643661	five period of Gastrodia elata	41.070
	SRR5643662	five period of Gastrodia elata	41.870
	SRR5643663	five period of Gastrodia elata	38.280
	SRR5643664	five period of Gastrodia elata	45.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.250
SRP279888	Gastro	Gastrodia elata tuber	32.09
	Juven	Juvenile tuber	50.82
	Mother_Gastro	Mother tuber of Gastrodia elata	38.42
	Mother_Juven	Mother tuber of Juvenile	35.74