Detail information of GWHGAAEX011224/evm.TU.scaffold_36.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428778925|ref|YP_007170711.1|2.00E-3930S ribosomal protein S10 [Dactylococcopsis salina PCC 8305]
KOGKOG09005.00E-5940S ribosomal protein S20
nrgi|743868803|ref|XP_010905666.1|1.15E-71PREDICTED: 30S ribosomal protein S10, chloroplastic [Elaeis guineensis]
Swissprottr|Q9M4Y3|RR10_MESCR8.00E-6530S ribosomal protein S10, chloroplastic (Precursor)
trEMBLtr|D7UAE2|D7UAE2_VITVI2.00E-68Putative uncharacterized protein {ECO:0000313|EMBL:CBI39707.3}
TAIRAT3G131205.00E-59Ribosomal protein S10p/S20e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003639613703977477-
Transcript Sequence

Network for GWHGAAEX011224

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00338.21Ribosomal_S101001944.70E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02946RP-S10, MRPS10, rpsJ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003723Molecular FunctionRNA binding
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.510
SRR2545915Juvenile tuber13.510
SRP108465SRR5643513five period of Gastrodia elata18.700
SRR5643514five period of Gastrodia elata25.440
SRR5643515five period of Gastrodia elata20.310
SRR5643524five period of Gastrodia elata22.770
SRR5643525five period of Gastrodia elata6.210
SRR5643528five period of Gastrodia elata5.840
SRR5643658five period of Gastrodia elata6.430
SRR5643659five period of Gastrodia elata14.620
SRR5643660five period of Gastrodia elata13.960
SRR5643661five period of Gastrodia elata17.480
SRR5643662five period of Gastrodia elata13.310
SRR5643663five period of Gastrodia elata10.510
SRR5643664five period of Gastrodia elata15.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.300
SRR6049655Rhizomagastrodiae_C368-T10_good_125.050
SRR6049656Rhizomagastrodiae_C368-T07_good_116.860
SRR6049657Rhizomagastrodiae_C368-T07_good_113.360
SRR6049658Rhizomagastrodiae_C368-T04_good_18.510
SRR6049659Rhizomagastrodiae_C368-T04_good_15.670
SRR6049660Rhizomagastrodiae_C368-T01_good_113.940
SRR6049661Rhizomagastrodiae_C368-T04_good_111.030
SRR6049662Rhizomagastrodiae_C368-T01_good_119.580
SRR6049663Rhizomagastrodiae_C368-T01_good_113.720
SRR6049664Rhizomagastrodiae_C368-T10_good_121.020
SRR6049665Rhizomagastrodiae_C368-T10_good_121.020
SRP279888GastroGastrodia elata tuber 8.36
JuvenJuvenile tuber10.86
Mother_GastroMother tuber of Gastrodia elata 3.92
Mother_JuvenMother tuber of Juvenile 7.17