Detail information of GWHGAAEX011225/evm.TU.scaffold_36.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166917|ref|YP_003405196.1| | 3.00E-86 | sugar transporter [Haloterrigena turkmenica DSM 5511] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|672143559|ref|XP_008795662.1| | 0 | PREDICTED: probable polyol transporter 6 [Phoenix dactylifera] |
| Swissprot | tr|Q8GXR2|PLT6_ARATH | 0 | Probable polyol transporter 6 |
| trEMBL | tr|M0YEC3|M0YEC3_HORVD | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_68396.1} |
| TAIR | AT4G36670 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000036 | 3982433 | 4001430 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011225
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 17 | 475 | 1.70E-108 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.090 |
| SRR2545915 | Juvenile tuber | 10.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.750 |
| SRR5643514 | five period of Gastrodia elata | 27.830 | |
| SRR5643515 | five period of Gastrodia elata | 30.800 | |
| SRR5643524 | five period of Gastrodia elata | 25.820 | |
| SRR5643525 | five period of Gastrodia elata | 8.900 | |
| SRR5643528 | five period of Gastrodia elata | 6.640 | |
| SRR5643658 | five period of Gastrodia elata | 11.740 | |
| SRR5643659 | five period of Gastrodia elata | 15.890 | |
| SRR5643660 | five period of Gastrodia elata | 17.460 | |
| SRR5643661 | five period of Gastrodia elata | 15.610 | |
| SRR5643662 | five period of Gastrodia elata | 15.060 | |
| SRR5643663 | five period of Gastrodia elata | 13.300 | |
| SRR5643664 | five period of Gastrodia elata | 20.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 42.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 79.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.14 |
| Juven | Juvenile tuber | 20.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.12 | |
| Mother_Juven | Mother tuber of Juvenile | 23.48 |