Detail information of GWHGAAEX011227/evm.TU.scaffold_36.93


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17442.00E-35Histone H2B
nrgi|672110370|ref|XP_008794946.1|8.85E-35PREDICTED: histone H2B.11-like [Phoenix dactylifera]
Swissprottr|P05621|H2B2_WHEAT3.00E-37Histone H2B.2
trEMBLtr|W5H5H3|W5H5H3_WHEAT2.00E-36Histone H2B {ECO:0000256|RuleBase:RU000451}
TAIRAT1G077902.00E-35Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003642254564226046+
Transcript Sequence

Network for GWHGAAEX011227

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone131162.90E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.160
SRR2545915Juvenile tuber11.320
SRP108465SRR5643513five period of Gastrodia elata15.580
SRR5643514five period of Gastrodia elata11.920
SRR5643515five period of Gastrodia elata15.550
SRR5643524five period of Gastrodia elata15.500
SRR5643525five period of Gastrodia elata24.870
SRR5643528five period of Gastrodia elata47.320
SRR5643658five period of Gastrodia elata16.470
SRR5643659five period of Gastrodia elata0.920
SRR5643660five period of Gastrodia elata0.340
SRR5643661five period of Gastrodia elata3.420
SRR5643662five period of Gastrodia elata0.510
SRR5643663five period of Gastrodia elata0.390
SRR5643664five period of Gastrodia elata0.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.780
SRR6049655Rhizomagastrodiae_C368-T10_good_117.550
SRR6049656Rhizomagastrodiae_C368-T07_good_112.970
SRR6049657Rhizomagastrodiae_C368-T07_good_19.320
SRR6049658Rhizomagastrodiae_C368-T04_good_18.830
SRR6049659Rhizomagastrodiae_C368-T04_good_15.610
SRR6049660Rhizomagastrodiae_C368-T01_good_14.810
SRR6049661Rhizomagastrodiae_C368-T04_good_19.530
SRR6049662Rhizomagastrodiae_C368-T01_good_118.350
SRR6049663Rhizomagastrodiae_C368-T01_good_112.820
SRR6049664Rhizomagastrodiae_C368-T10_good_144.680
SRR6049665Rhizomagastrodiae_C368-T10_good_144.680
SRP279888GastroGastrodia elata tuber 1.05
JuvenJuvenile tuber0.54
Mother_GastroMother tuber of Gastrodia elata 94.19
Mother_JuvenMother tuber of Juvenile 16.06