Gene detail

Detail information of GWHGAAEX011241/evm.TU.scaffold_36.108

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743822494\|ref\|XP_010932291.1\|	5.58E-34	PREDICTED: B3 domain-containing protein Os02g0598200-like [Elaeis guineensis]
Swissprot	tr\|Q6K5K2\|Y2982_ORYSJ	4.00E-23	B3 domain-containing protein Os02g0598200
trEMBL	tr\|I1P1V3\|I1P1V3_ORYGL	3.00E-21	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA02G0195900.1}
trEMBL	tr\|I1P1V3\|I1P1V3_ORYGL	1.00E-12	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA02G0195900.1}
TAIR	AT3G53310	2.00E-06	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	4690874	4724470	-

Transcript Sequence
>GWHTAAEX011241 ATGGGTCCCTGTCGCCACGCTGTCTCGCTCGTAGAGAGGCATGTGTCGACACGTGGCTACGCAGGTCGTGTCTATTTAGCCCACTGTCATTTGCAATGGGTGTCTGTGGGGCCCTCCCGACAGGTTCCAGCGAACCGCGTATTGACACGCGTCCGCGAGTCTCGTCACGCATGGTTTTTAAATCCTGGTTGTCTGGATCTTGCTAGGCTGGCCATCACACACCCTTGCAGGGCTTTCTTTGTTTCTGCCTGGAACTCAATTTGCGTGACCCCAACTGAAACAAATAACAAATTCTTTTGCAAAGCCTCCAGCCTCCGCCGCCCTCCCCAGTTTATTCCGCCAATGGCAGCATTTACCTTGAACTGTTTGGCTGAGAAGTATGTCTTTTTGGAAGATGCAACCGGAAAGTTCTGGAACATTAAGATGTCTGTGATAGATGGTTCATTGGCTTTTTATAAAGGATGGCATGATTTTATCTCTGACCATTCTATAATTACAGGGGAGTTTGCTTTATTTACTTACACTGGCGGATTATTATTTACAGTGCGGATATTTGGACTAAGCGCCATGGAGAGAGTGGCTTTTCAGTTGAAAAAAAAGCGAGGTAGGTGCGCAAAGGATTCAGAACGAACACTCTATGGAAACAATTGTGCTACAGTTGGGGGACTAACTGCAGTATCTCCTACTGTGCTTGCAAAGTCAGGCATAGACAACTTTGAAACAATTACATGTGAAAGCCTTAGAAATAGGATGATGAGCATAACTGAGGAAGGATCTGCTCTTCTGCATAGTTATGAAGGTCTAACACACAGGATGGATGAAAACCCTGATGCCATGACTAAAGCTGCTAGTTGGACTGTTAAAGCCCATTCTGATATTAAAGTGGGATTAATTGAAATGAGTTGTTCTCAAGTGCAGTTGAATGAAGCCCATGATAAAATTATAAACCATGAGAAGATAGAACAAGCCAATTTGCATGACTTGGAAATTATTGATACTGAGCTGTATGATGATGAAACAGCTCTTGACGAAAATGCAGACTGCAGTCTTAAATTGAATTTTGATTTGATTGAACCTGAGCTAATTGCTGATAAAGTTTTTCTCACAGAAAATGGAATATGCTACACCACTCTTGACGAAAAGTTAACAGAACTTGCAGTTGGAACTTTTTTTGATGTAAATGAACAAAAAGAACTGATAGACCAAAAGGATCATGCAACCCATGGCTTGGAAACTGGTTCCCCATGTAGACCTATGTCTATAGTTTCCAAACTAGACCACACCAATGATGAAGATAATTTAATGTCAATCTATGAAGAACATGGAGTTCATCATACCAATGGTAGCTATGCATTAGTCAAAAGTAGCCTTCGAAGCAGTACAGAAGCTCTCGAGTGCAATAAGAGAAGCCTAGTAAAATTTGATGAAACTTGCTTAGTTGCTATTCCATCCTCCAGTTACTTTAGTTTTGAAGTTTGCTTATCTGATGATGTTCAGTCCTTTATTGAATTACCAAAATCATTGGTTAGACAGATTAGCAAATTGAAATATTATAGGAAAATTGCCGTGCTTCAGGATCTGTCCATGAGGAGCTGGCCAGTCATGTATCACCAGAGCTTCAATTTTGTTGGATTTGTTGGCGGTTGGATTGATTTTGTCAGAGAAAATAATATTTGTCAAGGCGATACCTGCAAGTTTGAACTTGTAAATAAGATGGAACTTATATTTCTTGTGAACGTCATGAAACCAGAAGTATCCACCTTTGATGAAAAAGTAATGTCTCCTTGA

Network for GWHGAAEX011241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	495	577	4.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.070
SRP064423	SRR2545915	Juvenile tuber	4.440
SRP108465	SRR5643513	five period of Gastrodia elata	4.290
	SRR5643514	five period of Gastrodia elata	4.070
	SRR5643515	five period of Gastrodia elata	3.040
	SRR5643524	five period of Gastrodia elata	4.010
	SRR5643525	five period of Gastrodia elata	3.610
	SRR5643528	five period of Gastrodia elata	3.290
	SRR5643658	five period of Gastrodia elata	2.920
	SRR5643659	five period of Gastrodia elata	6.440
	SRR5643660	five period of Gastrodia elata	6.250
	SRR5643661	five period of Gastrodia elata	5.320
	SRR5643662	five period of Gastrodia elata	5.690
	SRR5643663	five period of Gastrodia elata	5.090
	SRR5643664	five period of Gastrodia elata	4.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.220
SRP279888	Gastro	Gastrodia elata tuber	6.84
	Juven	Juvenile tuber	4.38
	Mother_Gastro	Mother tuber of Gastrodia elata	3.93
	Mother_Juven	Mother tuber of Juvenile	4.03