Gene detail

Detail information of GWHGAAEX011243/evm.TU.scaffold_36.110

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743762346\|ref\|XP_010907692.1\|	5.28E-134	PREDICTED: FRIGIDA-like protein 1 [Elaeis guineensis]
Swissprot	tr\|Q67ZB3\|FRL3_ARATH	6.00E-68	FRIGIDA-like protein 3
trEMBL	tr\|M0T9Y2\|M0T9Y2_MUSAM	2.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P24860_001}
trEMBL	tr\|M0T9Y2\|M0T9Y2_MUSAM	1.00E-09	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P24860_001}
TAIR	AT3G22440	5.00E-48	FRIGIDA-like protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	5039727	5054413	+

Transcript Sequence
>GWHTAAEX011243 GTTACATTACATTAATTCCTAAAATGTCCTAAGCGAAAATAAAAGCGAGACAGCAACAAACCAATAGATCCTCTATAGCAACGGGAGTTAGGGTTTATTTTCTCCGGTTACAGAGACAACTGTCGTCTTCGGTTCTCGTCTCTGAAATCCTTTCAGAATTTCTTCTAGGTCTTTTTTTCTACTCTGTAACAGGCTTGTTATCACACCTGAGATGGGCACATCTGATATCGAGGCTGCCATCAATAGCACAGTTGAAAAGAAAGAGGATCTAAGGAAGGCCTTCGAGGCCCTCCAATCTCAGTCCAATTCATTAGTCTCCTTCACTCTTCAGTGGAAGCACATCGAAGATCACTTATCTTCCATCCAAAAATCCATCGAGGAAAGATTCCGAGAACTCAAGGACTTGGATAGCTCATTGGCTGTGAACAAGTTCGTAGCCACCCATCCGTCAGCGAAGTCGGCAGCAGCTGCAACGCTGACGGCAAAGAAGGCAACGATCTCAACACCGGCGGCAAAGAGGGCAACGATCTCAACGCCGGAGGCAAAGAAGGAAGCAGCCGCTTCGCCGGTGGCCAAGAAGGCAGTAACCGCTACGTTACTAGCCAAGAAGGCAGCAAGTAGCCCGTTGTCTTCAAAAGTCGAGAAACAACAAGATAAGCCAGAGTTACAGCCTCGCTCCGAGCTTAAGACCCTCTGCCTCAAAATGGACGGTAAAGGTTTGAGATCGTTCATTATTGATAACAGAAAGGACATTGTGGCGATCAGCAGTGAGCTTGGCGCTGCCCTTCGATCTGCACCGGATCCAGTCACGCTCGTCCTCGATTCTCTTGACGGCTATGTACCGTCTAAAAATATGTTGGATGGAGAGATACTTTCGATCAGGAGGACGTGTCTGACTCTCTTGGAGTGCCTTCATGATTTGGCTTTGGTGATTAACCCATTAGCTAAGGATAGGGCTCGGGGAGTGGCGGTAGAGTGGAAAAAGTTGGTTTCTGATGGGAAGAGGGATGCTTCGCTGGTAATCCTAGGTGTGTTGCATCTTGTTGCTACATTTAAGCTGGCTGAGTTGTTTGAGATTGACGAAATTCTGGATCTTATTGCTCGGGTTGCCAGAAGAAAGAATATAATTGATCTATGCAAGAGTTCTGCACTTGATGATAACATTCCTAATTTGGTTGAGAAGTTAAATGATAATGGGAAACAAGTGGATGCTGTCAAATTTGCCATTGCTTTCAATTTAACGGACAAATACCCACCGGTCTCACTTTTGAATGCTTATATAAAGGAATCAAAGAATGCTGCACAAGAAGTGCGTCGTAAAGGCAATAATTCCGCTCAGTCCAAGAATGAAGCCAAATCAAAAGAGATTGCTGCACTTAAAGCCGTAATAAAATGTGTAGAGGAGTACGATCTAAGGTCGGTATTCAGCACGGAGAATCTTCAGAAGCGTATTGAACAGTTGGAAAATCAGAAGGCTGAAAAGAAGCTGGAAAAAATGACCGAAAATCCAGTAAAGAAGCGAGGGGCTTTGTCCATTGCTGCTTTTGATTCAAATGGCAGGGGTCAGAATCAGCAACATAAACGACCAAACAAACGGTCTCGGTCTTCTGCTTCTACTGCACCCGTTCTTACACCACATAATCACATGCAGCGAGGCTTGGTTGACCGAGCTCCTTTTATAGGATTGTCAGAATCTTATAACTTAACTGCAGTTCCATCCCTTTATGATCGCGGCAGTGCAAATTTATTATCTAGCAATAGCACTATTGGACTTGGTGGATCTCATGGTTCACCCAAGCCATACCGCTATCCATCCCAATCTCTGGCAGGCCCAGCTTTTTATGACAGGGATCACTACCTATCGAGCTCTGTGGTGGGCCCTGCTTATTACGACAGGCCGGTGACAAATAGTGGTTATGGCAACTCGGGCTTGCCACCAGCTCCTTATCCTTCAGCTTTCTATTTTTGATGAGCTAATCATTTGCTATTTTCCCATCATTATTACGTCGAGTGAAACTTGCTCTATTGTGAATCCTGAAGGTGTTGCTAATGTAAAGTTGGTTTATTTCTGTATTTTGGAAATGTTGACATGTTTACTCAATGTTTTTGCGGCGAACTTATTTAAATTATTAGTCTTTTGGGTTTACCTTCTCAATTTTGTGATTTTACTCCTGGCCGTTCCTTTTTGTTTCAGCTATTATGGGCTTGTGATGGTTCGTAGCACATGTATCTTAGTATGATCATTCGTACATGCATATGGATGATGGTTATGTTGTAAGCAACACGTTCTGCCATCTTGACTATGATTTTTAGCTTTCAGTTCTGAACTACTGTTTATTTAACTACTGGCAATTCTCGGTTCTGGTTCACTTATTTTTTTTCGATAAATATTGGTGAATCTTTGTACTAAATAAAAG

Network for GWHGAAEX011243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07899.10	Frigida	153	425	3.30E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	72.690
SRP064423	SRR2545915	Juvenile tuber	88.900
SRP108465	SRR5643513	five period of Gastrodia elata	94.690
	SRR5643514	five period of Gastrodia elata	87.040
	SRR5643515	five period of Gastrodia elata	92.290
	SRR5643524	five period of Gastrodia elata	88.320
	SRR5643525	five period of Gastrodia elata	83.530
	SRR5643528	five period of Gastrodia elata	71.620
	SRR5643658	five period of Gastrodia elata	84.360
	SRR5643659	five period of Gastrodia elata	211.270
	SRR5643660	five period of Gastrodia elata	229.800
	SRR5643661	five period of Gastrodia elata	209.950
	SRR5643662	five period of Gastrodia elata	266.860
	SRR5643663	five period of Gastrodia elata	251.630
	SRR5643664	five period of Gastrodia elata	318.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	169.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	131.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	140.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	212.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	210.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	241.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	176.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	172.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	119.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	145.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	113.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	113.200
SRP279888	Gastro	Gastrodia elata tuber	229.34
	Juven	Juvenile tuber	155.36
	Mother_Gastro	Mother tuber of Gastrodia elata	52.66
	Mother_Juven	Mother tuber of Juvenile	84.93