Detail information of GWHGAAEX011245/evm.TU.scaffold_36.114


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|222152098|ref|YP_002561258.1|6.00E-88branched-chain amino acid aminotransferase [Macrococcus caseolyticus JCSC5402]
KOGKOG09750Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
nrgi|695048737|ref|XP_009412282.1|0PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FYA6|BCAT5_ARATH0Branched-chain-amino-acid aminotransferase 5, chloroplastic (Precursor)
trEMBLtr|M0TMR2|M0TMR2_MUSAM0Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}
TAIRAT5G657800branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003651158605178453+
Transcript Sequence

Network for GWHGAAEX011245

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01063.18Aminotran_41283653.40E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00826E2.6.1.42, ilvE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Pantothenate and CoA biosynthesismap00770
Glucosinolate biosynthesismap00966

Gene Ontology

GO term OntologyName
GO:0009081Biological Processbranched-chain amino acid metabolic process
GO:0004084Molecular Functionbranched-chain-amino-acid transaminase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.700
SRR2545915Juvenile tuber55.680
SRP108465SRR5643513five period of Gastrodia elata68.740
SRR5643514five period of Gastrodia elata60.560
SRR5643515five period of Gastrodia elata64.570
SRR5643524five period of Gastrodia elata70.180
SRR5643525five period of Gastrodia elata61.690
SRR5643528five period of Gastrodia elata72.830
SRR5643658five period of Gastrodia elata59.900
SRR5643659five period of Gastrodia elata45.110
SRR5643660five period of Gastrodia elata41.270
SRR5643661five period of Gastrodia elata46.050
SRR5643662five period of Gastrodia elata39.940
SRR5643663five period of Gastrodia elata53.600
SRR5643664five period of Gastrodia elata34.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.750
SRR6049655Rhizomagastrodiae_C368-T10_good_141.310
SRR6049656Rhizomagastrodiae_C368-T07_good_153.150
SRR6049657Rhizomagastrodiae_C368-T07_good_141.870
SRR6049658Rhizomagastrodiae_C368-T04_good_153.410
SRR6049659Rhizomagastrodiae_C368-T04_good_151.740
SRR6049660Rhizomagastrodiae_C368-T01_good_151.740
SRR6049661Rhizomagastrodiae_C368-T04_good_160.280
SRR6049662Rhizomagastrodiae_C368-T01_good_167.490
SRR6049663Rhizomagastrodiae_C368-T01_good_164.180
SRR6049664Rhizomagastrodiae_C368-T10_good_165.660
SRR6049665Rhizomagastrodiae_C368-T10_good_165.660
SRP279888GastroGastrodia elata tuber 56.71
JuvenJuvenile tuber52.98
Mother_GastroMother tuber of Gastrodia elata 48.52
Mother_JuvenMother tuber of Juvenile 43.85