Gene detail

Detail information of GWHGAAEX011247/evm.TU.scaffold_36.116

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|17232549\|ref\|NP_489097.1\|	3.00E-36	biotin carboxyl carrier protein [Nostoc sp. PCC 7120]
nr	gi\|695014957\|ref\|XP_009394324.1\|	3.53E-81	PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LLC1\|BCCP2_ARATH	2.00E-67	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic (Precursor)
trEMBL	tr\|M0SJ47\|M0SJ47_MUSAM	1.00E-81	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P30330_001}
TAIR	AT5G16390	2.00E-64	chloroplastic acetylcoenzyme A carboxylase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	5215048	5238734	-

Transcript Sequence
>GWHTAAEX011247 CTGGGAACTTCGATGAATCAGTTATGTAAATTATAAAATTCAACTGTTAACTTATTTATAATTTAAATCAAGTATATCAGCGAAGCCGAGGGATGAGATACACCAGAAGAAAAAAATCCCGCATCCAGATAACAGAATCAGAAGAGCTCCAACCCCCATTAATTTGTATCTTCCCTCGTTCTCTCCGCCCGCTGAAACCCTTATCTTTTCACCTTAAACGGTCTCGCTTGTTCATTATTTCTTCGTCTCTTCCACTAATCTCTGTCCCATTCTGCAATGGCGTCGTACATATTCGTTCCCTGCCCTAAATTTCCCTCCGTGCTCAACGGCAGGTCAGGGAGCGTTGCGGCGGTACCCCAAGCCTGGGTTTCGCGTCAGAGGCAGGAGAGAAAATTTCATGTTATGATGGCCAAGGCTAAAGAGGTAACTGTGGAGGGCTCTTCAAATTCTTTTCCCATGACAGCAACCAAGTCAGAAATTCAAACACCCAAGGAGAAAGATGTTGTCGCAGAAGATAGAACCACCATTCAAGCTGCAGTTTCAGATTCAGATATATCAGCATTCATGTCTGAGGTTTCAAATCTTGTCAAGCTTGTTGATTCCCGAGATATCACAGAACTTCAGCTGAAACAAAAGGATTGTGAGCTTATAATAAGGAAAAAGGAGGCCTTACAACAGCAAGCACCTGCTGCTCCTGTTGTCATGATGCAGCAGCCTCCACAGAGCATGTTTTCAACACAACCAGTGGTCTCCCATGCCCCTCCATCAAATTCTAATCCACCTGCTCTAGTTCCCGCACTTCCGCCTGCAAAGACCATCAAATCCTCGCTTCCTCCACTAAAATGCCCCATGGCTGGAACTTTTTATCGTAGCCCAGCACCAGGAGAACCACCTTTTGCCAAGGTCGGAGATAAGGTCAAGAAGGGGCAGGTTGTTTGTATTATTGAAGCTATGAAGTTAATGAATGAGATTGAGGCTGATCAATCTGGCACAGTAATAGATATACTTGTGGAAGATGGAAAGCCAGTTAGTGTTGACACGCCATTGCTTATTATTGGGCCCTGAAAGGACTATAATAGCTTTGTCAAAAATGTTCAGTGAGGTTAATGGTGGCCCTTTCAACAGTGAAAACTCATTTGTTTCAAAGGTTTGGTCTTCTGCAATGATATAATGGATGAAGTCCCCTTCCATTGCATATGAAAATTTATTTTTTGGTGAATATTGTTGACATTAGGGTGTTGAACTTGAGATAGCTTTTGGTAGTGTTTTCTTATCTGCCTGTACTGAAAAGAATGAGGTTATCTAAGTTAAAGATTTTTACATGCGTTCATGAACTGTTCTGTTAGCCTAGATTAATGTAAGTATTTATGAGTGAATGTATGATGTGCATGCGAGCTGACACATTTAACCTTCTATGTATAACACTTAAGGATTTTATCTTTTTGTGCAAAGTTTTCTTATCCCATACATTTGGTGCCTATATTATGACTCCTATAAGTATTCTAAGAGGGTTTCTTTGGTCATTTGCTGAGACACTTCACTTCCAACGTCCACTTCTGTATGGAAACTTGAATTTTTTTTTAATCAAAACTTTTCCTAAAATTTATGAGAAGGTTATAACTTATAGGGAAGCTTAAAGGTTCAAATCATTAAGAGTTACATGCATGATGGAAGCTGTGTGCATATATTTTGTATTCAGTGCCATAGTAGCCTTGAGTATTGATGTATTTTATATTGGTCTTTTTTAATGCTTGCATTGTCTTAATGCTGATTTTATTTTTTTCATGTTGATAGTTGGCTATTTCCTCATTACATATATGATTCCTTTGCTTGTATAAGGAATGTGTTATGGTTTTATAACTGTTGAGTGTTATTTATTAACTTTGATCATCCCATAATGCTTACTTCGATTATATCATCATCTCTTTCAAACCATTCGATCACTTAATTCTACTTGTTTTTCTTATAGTTTCAATCTTTACATGAAGTC

Network for GWHGAAEX011247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.21	Biotin_lipoyl	188	260	5.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02160	accB, bccP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0003989	Molecular Function	acetyl-CoA carboxylase activity
GO:0009317	Cellular Component	acetyl-CoA carboxylase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.240
SRP064423	SRR2545915	Juvenile tuber	52.350
SRP108465	SRR5643513	five period of Gastrodia elata	34.180
	SRR5643514	five period of Gastrodia elata	34.460
	SRR5643515	five period of Gastrodia elata	37.190
	SRR5643524	five period of Gastrodia elata	31.320
	SRR5643525	five period of Gastrodia elata	48.920
	SRR5643528	five period of Gastrodia elata	41.190
	SRR5643658	five period of Gastrodia elata	49.200
	SRR5643659	five period of Gastrodia elata	45.470
	SRR5643660	five period of Gastrodia elata	47.590
	SRR5643661	five period of Gastrodia elata	42.530
	SRR5643662	five period of Gastrodia elata	61.220
	SRR5643663	five period of Gastrodia elata	55.960
	SRR5643664	five period of Gastrodia elata	58.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.560
SRP279888	Gastro	Gastrodia elata tuber	59.43
	Juven	Juvenile tuber	34.62
	Mother_Gastro	Mother tuber of Gastrodia elata	29.23
	Mother_Juven	Mother tuber of Juvenile	27.90