Gene detail

Detail information of GWHGAAEX011254/evm.TU.scaffold_36.130

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743846962\|ref\|XP_010938978.1\|	0	PREDICTED: protein SHORT-ROOT 1-like [Elaeis guineensis]
Swissprot	tr\|Q8H2X8\|SHR1_ORYSJ	1.00E-178	Protein SHORT-ROOT 1
trEMBL	tr\|W5BL52\|W5BL52_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_2BS_736EF207B1.2}
TAIR	AT4G37650	8.00E-155	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000036	6012685	6014820	+

Transcript Sequence
>GWHTAAEX011254 GATGAAACAAAGGGAAGCACCAAACATAACATTATTAAGGTAAATTCTCTCAGCATCCCATGGACGCATACACCGCAATCCACCACCCACCCGTTACCTATCAACTAAAGGTAGCACCCACAGCTAAATTCCAATCCCAAGATCTTCTCATCATCTCTCCCTCTCTTTCTCTCTCTGACTCAAACGCACGCCTTAATACTTTTTAGAACTCCCAGGGCAGACTATAGCACCCATATTTCACTAGCTATCCTCCAACAGCTATAATTCCTTTGTCTTCCCACTTGAAAACAAGAGCTAATGTGACGGCTACTGAAGCATCAGGTAGATGGATACCTTATTCCGAATGGTTAACCTTCACTCAACTGGCGAGCCACAGCAGCAGCAGCAATCCTCCAGATCTCTGAATTCCAGCAACACGTCAAGCAGTTCCCGATCTACTGGGCAGCCAACCCAGCAGCAATACCTCCCTTCCCCCCCATACTTTGAGGTTTCCCAAGAGGAAGAATGCGGCTTCATCCATCTTCAGCAGCCATATTTGTACAACAGCAGCAGCAGCAGCAATTACAACCATCTTTACATGGACGACGACTTCTCATCCTCGACTTCTTCTTCGAAGCAGCTTCACATATCTCCCCGCTACCCCACCCCTACTACAGCTGGCCTTTCCCTCCCGCCCAGCCTCGAAGCCTTCTCTTCGGATTCCAACTGTCGCTGGCCATCTGACATGCTCCTTGACTGTGCGCGAGCTGTGGCCTTCGGCGACAGCCCCCGCGTTCAGCAGCTCATGTGGATGCTCAACGAGCTTGCCTCCCCTTACGGCGAGCTAGACCAAAAGCTGGCCTCCTACTTCGTCCAAGCCCTCTTCGCCCGCCTCACCTCCTCTGGCCCTCGCACCCTCCGAACCCTTTCCTCTGCTTGCGACCAAACCACCTCCTTCGATTCCACCCGCCGCACTGCCCTCCGCTTCCAGGAACTGAGCCCGTGGTCCTCCTTCGGCCACGTGGCCGCAAACGGCGCCATTCTCGAATCATTCCTCCACCACTCGAGCCCCCCTCGCTCTCCTCCAGCTCGCCTCCACATCCTCGACCTCTCCACCACTTTCTGCACCCAATGGCCTACACTGCTAGAAGCCCTGGCAACCCGCTCCACCGCCGAAGAAACACCTCATCTATCAATCACCACCGTGGTCCCCTCTGCATCGCCGTCAGCCCACAGAGTCATGAGAGAAATCGCTGCTCGAATGGAGAAGTTCGCCCGCCTCATGGCTGTCCCGTTCCACTTCTCCGTCATCCACCACCCTGACACCGACCTCTCCACTCTCAACCTCGACTCCCTCGTCTCCTCCGGCTGCGCTCTTGCTGTCAACTGTGTCAACTCTCTCCACGGCGTATCACCCTCCGCCCGCCGCCGCGACGTGCTGCTCGCCAAAATTCGCAAGCTGCGGCCGCGGATCGTGACGGTGGTCGAGGAGGAAGCCGATCTCGACTTCGACGAGGATGACAAAGAGGGGTTCATAAGGGGGTTTCGAGAAGGCTTGAGGTTCTTCTCTGCTTATTTTGATTCTCTTGAGGAGAGCTTTCCCAGGACGAGCAATGAGCGGCTTGCGCTCGAGCGGGCAGCAGGCCGGGCCCTCGTAGACCTTGTTGCTTGCCCCTCAACTGACTCAACGGAAAGGCGGGAGACGGCTGCCAGATGGTCTCGGAGGATGCGGCTTGCAGGATTCTCATCCATCGCTTTTAGTGATGATGTGGCTGATGACTTGAGAGCTTTGCTCAGGAGGTACAAGGAAGGGTGGTCAATGCAGCCTACTGCGAGGGAGGAGGATGCCCAGGATATGACGTCTTCCAATGCACCTGCAGCAGGTATGTTTCTGACTTGGAGAGAGCAGGCGGTGGTGTGGTCAAGCGCTTGGACAGCCTGACCACCGTTTCATCGGCGGCGCGCCGGCGAGTGCATTGGTAAAACACGTGGAATTCGGAGATGGATGGATCACTATATCGAAGATTTGTAATCACGTTTACAATATATTTTCCTGCATCAATAGAGAATTTTGTGCCTTTTAAATTCTTTTTAATATGGTATGCTTCCTTTTATAGCCCTCAATTCTACAAATAATAATGCATAACGTTTTGTGAT

Network for GWHGAAEX011254

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	133	530	2.60E-91

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.860
SRP064423	SRR2545915	Juvenile tuber	1.200
SRP108465	SRR5643513	five period of Gastrodia elata	4.650
	SRR5643514	five period of Gastrodia elata	4.690
	SRR5643515	five period of Gastrodia elata	1.540
	SRR5643524	five period of Gastrodia elata	2.980
	SRR5643525	five period of Gastrodia elata	5.360
	SRR5643528	five period of Gastrodia elata	3.800
	SRR5643658	five period of Gastrodia elata	4.000
	SRR5643659	five period of Gastrodia elata	1.170
	SRR5643660	five period of Gastrodia elata	0.460
	SRR5643661	five period of Gastrodia elata	0.730
	SRR5643662	five period of Gastrodia elata	1.690
	SRR5643663	five period of Gastrodia elata	1.400
	SRR5643664	five period of Gastrodia elata	0.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.100
SRP279888	Gastro	Gastrodia elata tuber	1.65
	Juven	Juvenile tuber	2.46
	Mother_Gastro	Mother tuber of Gastrodia elata	1.58
	Mother_Juven	Mother tuber of Juvenile	0.49