Detail information of GWHGAAEX011267/evm.TU.scaffold_37.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1914 | 0 | mRNA cleavage and polyadenylation factor I complex, subunit RNA14 |
| nr | gi|743877530|ref|XP_010907924.1| | 0 | PREDICTED: cleavage stimulation factor subunit 77 isoform X3 [Elaeis guineensis] |
| Swissprot | tr|Q8GUP1|CTF77_ARATH | 0 | Cleavage stimulation factor subunit 77 {ECO:0000303|PubMed:12379796} |
| trEMBL | tr|M0U122|M0U122_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P17150_001} |
| TAIR | AT1G17760 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 328 | 103722 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011267
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05843.13 | Suf | 349 | 638 | 4.20E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14408 | CSTF3, RNA14 | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006397 | Biological Process | mRNA processing |
| GO:0006396 | Biological Process | RNA processing |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.920 |
| SRR2545915 | Juvenile tuber | 10.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.780 |
| SRR5643514 | five period of Gastrodia elata | 7.720 | |
| SRR5643515 | five period of Gastrodia elata | 7.100 | |
| SRR5643524 | five period of Gastrodia elata | 7.520 | |
| SRR5643525 | five period of Gastrodia elata | 6.200 | |
| SRR5643528 | five period of Gastrodia elata | 5.750 | |
| SRR5643658 | five period of Gastrodia elata | 6.610 | |
| SRR5643659 | five period of Gastrodia elata | 6.510 | |
| SRR5643660 | five period of Gastrodia elata | 6.700 | |
| SRR5643661 | five period of Gastrodia elata | 7.590 | |
| SRR5643662 | five period of Gastrodia elata | 7.770 | |
| SRR5643663 | five period of Gastrodia elata | 6.620 | |
| SRR5643664 | five period of Gastrodia elata | 7.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.34 |
| Juven | Juvenile tuber | 9.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.11 | |
| Mother_Juven | Mother tuber of Juvenile | 9.47 |