Gene detail

Detail information of GWHGAAEX011271/evm.TU.scaffold_37.5

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262196624\|ref\|YP_003267833.1\|	3.00E-08	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOG	KOG0118	1.00E-113	FOG: RRM domain
nr	gi\|743862926\|ref\|XP_010943670.1\|	5.42E-144	PREDICTED: UBP1-associated protein 2A-like [Elaeis guineensis]
Swissprot	tr\|Q9LES2\|UBA2A_ARATH	3.00E-114	UBP1-associated protein 2A
trEMBL	tr\|M0T7E3\|M0T7E3_MUSAM	5.00E-124	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P15950_001}
TAIR	AT3G56860	1.00E-113	UBP1-associated protein 2A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	148481	158726	+

Transcript Sequence
>GWHTAAEX011271 GTTTTATTTTTACTTCGGCGCGCGTGTATATATATGCAAATCGTCTTCGTCGGTATAGAAACTTCAAACCCTAATCGACAGTTCGCAGCTAATGGGAAAGAAGAGAAAGCTAGAAGGCATGCCAGAGACCGCAGATTCCGAAGAGCTCGTCTTCAACCAGGAGGAGGAAAAAACGTTAAACGAAGAGTCTGTGGCTCCATTTTCCATTGATCCGCGAACCGAAGGATCGTGGGAGCCGGAGATCGATGAATCGATCAACGAGCAATTACTAGTCGAGGCAGATGCCAAGCCTGAAGACTTTGAAGCCACAGATCCCGGCCCGAATACTTCGGGCGTCAGCGATTCTCTTCCCTCTGACAGTCACGAAGATGATGAGGACAATGACCCCGCGTCATTGCAGAAACTCATTGAACCTTTCAGCAAAGATCAGCTATCTGATCTCCTCCGCGACGCGGCCTTGAAACACCCGGACGTTTGGGCCTCCATCCGAGAAACTGCAGACGCTGATCCCTCTCACAGAAAGATCTTCGTCCACGGCCTCGGCTGGAATTCTACCACTGAAACCCTTATCGATGCTTTTCGTCAGTTTGGAGAGATTGAGGACTGCAAAGCCATCGTTGACAAAGCCACCGGCAGGTCCAAGGGTTACGGCTTCGTTATCTTCAAGAACCGGAGCAGCGCTCGCCGAGCGTTAAAGGATCCTCAGAAGAAAATAGGTAATAAGATGACTGCCTGCCAGCTCGCATCAGAGGGCCCTCCCCCTATTTCTTCTGCATCCGCCTTCATTCCTGCTCCTGCTGTCCCTGCATTTATTCCGACCCAACAGCCTAATATTCCTCCAGTGTCTGAATACACTCAGCGCAAGATCTACGTCAGCAATGTGGGAGCTGATCTTGACCCGCAAAAGGTTCTGGAGTTCTTTTCAAAGTTTGGAGAGATAGAGGAAGGGCCTTTAGGGCTGGATAAAGATACAGGGAAACTAAAGGGTTTTTGCCTCTTTGTTTTTAAGACTGTTGAGAGCGCAAAGAAGGCATTGGAAGAGCCACATAAGAACTTTGAAGGCCATATACTGCATTGCCAGAAGGCCATTGATGGTCCCAAGATCAACAAGCATGGAGTGCATATTCATCATGCAGGTGGGAAATTTAAAGGTGGTAAACAGGGACAGAGGCCTCAATTTCGAAGGATTGATACTTCTGTACCAATGGGTGGCGTGCCCTCTTCGGTTGGTGGCCCAGGGCATCTAATAGCTCCTCCTGCTGTTAGTGTACGTTTTAACCAGGCGGGACAACCTAATTCAACTTCAGGAGTTGGATATAATCCTGCATTAGTAAAGAACGGAGGGTTTGTGGCAAAGCCTGCTTTTGGGAATCAGGTAGTAGGAGCTGGAAGTTTTATGAATCCTAGTGTGGTTGGTGCTTATGGCCCGTCTTTGAGGATCCATGGAAATTATGGCAACACAGCAATGGGACAGGGGAATGCTTGGGCCCAGCAAAGCTTTAGTCATATGGGTGGTGTAGCAACTTCCACGGCTCAATAGTAGACCACTGGATACCTTGATTCTGAACATTGTATGATGTGACCAATGAAACATTGACTTCCCTTGGTTTGAGGGAAGTGGGAAAAGATGTCCCATAATAAAAGCGTATTCTCTGTAGTTCTTCTGACTTCTGAGAAGATGATTCTTCCGGAGTTTCCTGCTCGAGGAAAAATGTCCTTTTTTACCTCTTTTTCTACCCGCTCCTGCTGCCTCTGCGAGTTTTCATCTATGTTTTTATATTAAAAAACCCATTTTAAAACATTTTTATAATTTTCAATGGCTTTCTAAAAACTTATTTCTTTGACCAAATGCTTCTTCTCTGCTTCAGAAGAACTCCATGTATTCAAAACATTTTTTAACTGGTTTTCTGACATTTTCACATTTATCTGTCCACTCTCTTACTCCCTTTGGCATTTATTTGGTGCCACAGTTTTTTTAAATATTTCAGTATTTTATCAAAAATCTTCCTTTCTTAA

Network for GWHGAAEX011271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	145	208	2.60E-15
PF00076.21	RRM_1	259	327	3.60E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.030
SRP064423	SRR2545915	Juvenile tuber	22.050
SRP108465	SRR5643513	five period of Gastrodia elata	36.110
	SRR5643514	five period of Gastrodia elata	35.530
	SRR5643515	five period of Gastrodia elata	33.560
	SRR5643524	five period of Gastrodia elata	36.900
	SRR5643525	five period of Gastrodia elata	29.340
	SRR5643528	five period of Gastrodia elata	33.460
	SRR5643658	five period of Gastrodia elata	31.560
	SRR5643659	five period of Gastrodia elata	40.090
	SRR5643660	five period of Gastrodia elata	36.710
	SRR5643661	five period of Gastrodia elata	38.020
	SRR5643662	five period of Gastrodia elata	40.140
	SRR5643663	five period of Gastrodia elata	29.840
	SRR5643664	five period of Gastrodia elata	28.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.050
SRP279888	Gastro	Gastrodia elata tuber	32.99
	Juven	Juvenile tuber	35.44
	Mother_Gastro	Mother tuber of Gastrodia elata	24.66
	Mother_Juven	Mother tuber of Juvenile	26.82