Detail information of GWHGAAEX011274/evm.TU.scaffold_37.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|170290521|ref|YP_001737337.1|5.00E-31small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
KOGKOG00707.00E-117GTP-binding ADP-ribosylation factor Arf1
nrgi|413932673|gb|AFW67224.1|2.07E-116hypothetical protein ZEAMMB73_332083 [Zea mays]
Swissprottr|O48920|ARF_VIGUN5.00E-117ADP-ribosylation factor
trEMBLtr|A0A096TK93|A0A096TK93_MAIZE8.00E-117Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G395844_P01}
TAIRAT5G146707.00E-117ADP-ribosylation factor A1B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000043177327200344+
Transcript Sequence

Network for GWHGAAEX011274

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00025.20Arf61772.10E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07937ARF1 Phospholipase D signaling pathway map04072
Endocytosismap04144

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.930
SRR2545915Juvenile tuber11.430
SRP108465SRR5643513five period of Gastrodia elata11.680
SRR5643514five period of Gastrodia elata11.910
SRR5643515five period of Gastrodia elata15.790
SRR5643524five period of Gastrodia elata14.820
SRR5643525five period of Gastrodia elata14.940
SRR5643528five period of Gastrodia elata20.080
SRR5643658five period of Gastrodia elata18.390
SRR5643659five period of Gastrodia elata12.110
SRR5643660five period of Gastrodia elata11.980
SRR5643661five period of Gastrodia elata13.910
SRR5643662five period of Gastrodia elata13.030
SRR5643663five period of Gastrodia elata13.150
SRR5643664five period of Gastrodia elata12.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.350
SRR6049655Rhizomagastrodiae_C368-T10_good_15.460
SRR6049656Rhizomagastrodiae_C368-T07_good_16.460
SRR6049657Rhizomagastrodiae_C368-T07_good_16.990
SRR6049658Rhizomagastrodiae_C368-T04_good_10.150
SRR6049659Rhizomagastrodiae_C368-T04_good_10.060
SRR6049660Rhizomagastrodiae_C368-T01_good_11.640
SRR6049661Rhizomagastrodiae_C368-T04_good_10.050
SRR6049662Rhizomagastrodiae_C368-T01_good_11.670
SRR6049663Rhizomagastrodiae_C368-T01_good_10.350
SRR6049664Rhizomagastrodiae_C368-T10_good_113.070
SRR6049665Rhizomagastrodiae_C368-T10_good_113.070
SRP279888GastroGastrodia elata tuber 5.58
JuvenJuvenile tuber11.60
Mother_GastroMother tuber of Gastrodia elata 15.32
Mother_JuvenMother tuber of Juvenile 18.25