Gene detail

Detail information of GWHGAAEX011275/evm.TU.scaffold_37.9

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0702	1.00E-68	Predicted GTPase-activating protein
nr	gi\|672172304\|ref\|XP_008806240.1\|	4.84E-176	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8RXE7\|AGD14_ARATH	2.00E-127	Probable ADP-ribosylation factor GTPase-activating protein AGD14
trEMBL	tr\|A0A061F150\|A0A061F150_THECC	7.00E-163	ARF GAP-like zinc finger-containing protein ZIGA4, putative isoform 3 {ECO:0000313\|EMBL:EOY10412.1}
TAIR	AT1G08680	1.00E-68	ARF GAP-like zinc finger-containing protein ZIGA4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	203874	219390	+

Transcript Sequence
>GWHTAAEX011275 TGACTCTCTCTCTCTCTCTTCCATCCCTCTTTTTTGTCTTCATCGACACCATTAGCAGGAAACGAAGCTCCTCCTCGAGGCCTGGGAGGCGAGGGGCGGGCACCGACTCTCTTCTTCTCTTCTTCTCTCAATATTTGCTCAAAACCCTAGATTCGAAATGCAATTTGGAAGCGAAACATATTCACGTTTGATCTTATCGCGGTAAGCATAGAACAACGGTGAGGGAGAGGCAGAAGGATCGGAGCTCTGGGCGTTTTGGAGGCCCTGCCTATTTTGAGGAGGAATAACACGATACGGGATTTAGAGAAATCGTTTGGAATTGAAGCCTGTGGTTTTGAATACCCTCGTCGCATTCTGGTTTCATTTGAAGGAAGGATTCACCACGAGTTTTGCGACTCTTATTCCCTTGTCAGAGATGAGTAGCAGAAGGGAGGAGGAGAGAAATGAGAAGATTATTAGGGGTCTCTTGAAGCTCCCCCCAAATCGTAGATGCATCAACTGCAATGGCCTGGGTCCTCAATATGTCTGTACAAACTTTTGGACTTTTGTATGCACTGCTTGCAGCGGGATACACCGTGAATTTACTCATCGTGTGAAGTCTGTATCCATGGCTAACTTTACAACACAAGAAGTGGAGGCTCTTCAAAGTGGAGGCAATCAGCGAGCTAGAGAGCTGTTCTTGAAGAACTGGGACATGCAAATCATGAAACTTCCTGATAGCAGTTATCCAGACAAAATTAGGGAATTCATAAAAACCGTTTATTTGGAAAAGAAGTATGCTGGAAGGCCTTTTGACAAACCTCCTAGGGATCTGCAGGACCTCAAGAGTCATGAAGATTATAGGAGGGCCAGCTCCTACCATTCCTTTTCTCAGAGCCCACCTTACGACCATCAATATGAAGATAGACGGTATGGAAAACAAAAAATCATGCTTACTAGAAAGCCTGGCTCAGATCATGGTCATTACGAGGGAAATATTCCCAATGTCTTGTACAGTCCTGGCCGAAGTAGAGAACATGTATACGATGATCAGTTTGCAAATGAGAGTTCTAGCTCAAGAATCAGTGACTACTCTTTATCTAGTGCAGGTGATATTCTTAGATCCAGTGACCAGCCACCAAGCACCTTTAGTGAGCCTTCAACACAAAGATCCGCTTCATTGGGCAGCTTCTGGTCCTTTGATAGCAACTCACTACATTCTAAATCTGCTAATTCTGGTGTCTCATTCGGCACCGTATTTCAGCCCAAGCACCCTTCTGTAAGCCAGCAGCAGCCTGTTAAGCCCTCAATTGCCACATCAGAGACATCTGCCACACAACATACTGCTATGATTGATCTTTTCAGCCCACGATTTTCACAGCAACAGAATACAGGAACTTCTGTGGATCTTTTTGCGAACTTTAATAATCAGAGTTGTGCTTTCGTATCTCTTAATAAGGCAGCACCAGTTTCTAGCTCAGAAAATGAAGGGTGGGCTGTGTTTGACACAGTTCAAGTGGCACCCTATACTGAGACAAGCAAAGGGCTTTCCTCTATGACATCTCCATGCTTAAAAAAGATTGATGAGACTTTCCATTCATTTTCAAGAACGCAAGGAACATCAAAATTGTTTTCGGCTCAAAAGTTATCAGTTAATGGGGAAGTAATATCTTCAAGTAATCAATGGCATTTAGGATTTACTGAAATACAGAATGTTGCAGACTCAACAAGTACCCCGGCTTTCAATGGACCTTCTTTCTTTGGTGTTCAGCACACTGAGGTGATGCTACCCAAGGTACTAAAGGAAAATGGTTCCCAGTTTCCTGTTGTGCAAGATGAAAACCCACTGATTAAACTTTCGTCTGTAAGAATGCCTTCAGTTGCTCCTCCTAATGAGGTGAGCAGAGCTCAAGAATGGAAATCAACAAATCCATTTGATCTATCATACGATTTGGACGCAGGAGCTAATAACATGCTCTTTGATATGAGCTCGTTGCATGGGGCACTGCCAAATCCTCAGTTGCCAAGTGCCTTTCTGGATGGCTTATCATCTCAGCCATGGTTCCAACGAAATTCTGCTTCAACATACATCCCTACTGTACCCCAAGCTGGAATGCCATATGCTGTAGGGCAGGTTCAATCCTCACAATTGCCGACTTGCATAATAGCTTCACAAGACTCTGCGCCGTCGTCTTGCAATCCCTTCGCGTAGCAAGAGGCCGGATTGGCGCATCCACCCATCCCCTCGTTCTTCGAGCAGCGCCGAGTCGACCGCCTTCCTGTGTTGTCTGTCTCTTGCACGCATTTTCTTCGGGATGGGAAAGCGCCTTATTCATGAATGTTGCTGCGGATGGTTGCTTGGAGGGTGCCTGAGGCAGCAGCTGCCGTTATTGATGGATCTTAGCTTTTAGTATATTTGATTAATTGATTGATATTATATATGCATACTTTATAAGACTGGTTATAAAATTGCTTGGCCTTCAGTATTAATTAATTATTGTTTTGTGAACCATAATTACTTTTGTTAGCATTTTCTAATTCATCTCATTCGAAGAAGAGCAACACTTTAAATGCAAGTATGTAATAAATCATATTTATACCAAAATCATCTTTTATTAGAATAGTTATAGATTCAA

Network for GWHGAAEX011275

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.17	ArfGap	12	122	7.30E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005096	Molecular Function	GTPase activator activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.220
SRP064423	SRR2545915	Juvenile tuber	26.660
SRP108465	SRR5643513	five period of Gastrodia elata	23.380
	SRR5643514	five period of Gastrodia elata	27.140
	SRR5643515	five period of Gastrodia elata	22.430
	SRR5643524	five period of Gastrodia elata	26.140
	SRR5643525	five period of Gastrodia elata	26.800
	SRR5643528	five period of Gastrodia elata	23.120
	SRR5643658	five period of Gastrodia elata	25.710
	SRR5643659	five period of Gastrodia elata	20.870
	SRR5643660	five period of Gastrodia elata	22.650
	SRR5643661	five period of Gastrodia elata	19.370
	SRR5643662	five period of Gastrodia elata	21.250
	SRR5643663	five period of Gastrodia elata	20.840
	SRR5643664	five period of Gastrodia elata	21.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.990
SRP279888	Gastro	Gastrodia elata tuber	33.61
	Juven	Juvenile tuber	45.15
	Mother_Gastro	Mother tuber of Gastrodia elata	53.89
	Mother_Juven	Mother tuber of Juvenile	50.49