Detail information of GWHGAAEX011277/evm.TU.scaffold_37.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|313675697|ref|YP_004053693.1| | 3.00E-25 | oxidoreductase fad/nad(p)-binding domain protein [Marivirga tractuosa DSM 4126] |
| KOG | KOG0534 | 5.00E-150 | NADH-cytochrome b-5 reductase |
| nr | gi|586659450|ref|XP_006829810.1| | 2.16E-164 | hypothetical protein AMTR_s00119p00071880 [Amborella trichopoda] |
| Swissprot | tr|Q9ZNT1|NB5R1_ARATH | 1.00E-150 | NADH--cytochrome b5 reductase 1 |
| trEMBL | tr|W1NNF0|W1NNF0_AMBTC | 8.00E-165 | NADH-cytochrome b5 reductase {ECO:0000256|RuleBase:RU361226} |
| TAIR | AT5G17770 | 5.00E-150 | NADH:cytochrome B5 reductase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 229168 | 238152 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011277
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00970.23 | FAD_binding_6 | 47 | 144 | 3.50E-32 |
| PF00175.20 | NAD_binding_1 | 155 | 261 | 6.50E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00326 | E1.6.2.2 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.100 |
| SRR2545915 | Juvenile tuber | 33.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.890 |
| SRR5643514 | five period of Gastrodia elata | 43.760 | |
| SRR5643515 | five period of Gastrodia elata | 44.180 | |
| SRR5643524 | five period of Gastrodia elata | 44.590 | |
| SRR5643525 | five period of Gastrodia elata | 48.710 | |
| SRR5643528 | five period of Gastrodia elata | 63.360 | |
| SRR5643658 | five period of Gastrodia elata | 63.630 | |
| SRR5643659 | five period of Gastrodia elata | 33.200 | |
| SRR5643660 | five period of Gastrodia elata | 25.830 | |
| SRR5643661 | five period of Gastrodia elata | 33.550 | |
| SRR5643662 | five period of Gastrodia elata | 33.290 | |
| SRR5643663 | five period of Gastrodia elata | 32.040 | |
| SRR5643664 | five period of Gastrodia elata | 22.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 58.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 58.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.33 |
| Juven | Juvenile tuber | 18.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.82 | |
| Mother_Juven | Mother tuber of Juvenile | 15.19 |