Gene detail

Detail information of GWHGAAEX011279/evm.TU.scaffold_37.14

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672139102\|ref\|XP_008793328.1\|	0	PREDICTED: uncharacterized protein LOC103709652 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|F4I1T7\|NP214_ARATH	1.00E-100	Nuclear pore complex protein NUP214 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|M0SWJ9\|M0SWJ9_MUSAM	1.00E-151	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P07700_001}
trEMBL	tr\|M0SWJ9\|M0SWJ9_MUSAM	7.00E-76	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P07700_001}
TAIR	AT1G55540	1.00E-98	Nuclear pore complex protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	252749	331911	-

Transcript Sequence
>GWHTAAEX011279 TTCCCGGTGATCCTCTACAGTCCTATTCCCTTTGCGAGGTTCTGCATTCTCCATTCAACCATGGTTGGGAAGTCGACCCCTCTCATCTCATTGAAAGAAGAGATCGAAGGCGACTGCGTGGGAACGGTGGACTTCGTTTTCTTCAGGATCGGCGATCCTATCCCTCTAAAGCCTTCCCACTGCGATTCCTCTTTCGATCTATCCAACCCACCGTCGCAGCCTCTGGCTGTCTCGGAACGCCACCACCTTTTATTTCTAGCTCACTCAGAAGGGTTTTTGGTTGCGAATACCAAGAATGTGGTTAAATTAGCCAAAGGAACCAGGGGGAAGGACACTTGTGTGCAAGAATCGTGCGTTGTGAATGTGCTGATTGGTAGGGTTTCAATCCTGGCACTTTCTGGTGACAGCACGATGCTCTCTGCTACTGTTGGTGGGGAAATTCGCTTGTACTTTGTTCCATCTCTTCTGATCAAGGCGCAAGATCCAGCTATCACATTCTCCCTCAACAATTCTGGCATTGTTAAAGAGTTGAAATGGCAAAAAAATTTGGCGGATTCTTTCATTGTTTTATCAAGTGATGGAATACTTTTTCACGGGTCTTCAAATACTCAGCTTAAGGATGTGATGGACAAAGTCGATGCTGTTGACTGGTGCGTAGATGGCAATTTTGTTGCTATTGCAAGGAAGAATACTGTTAGCATTTTATCACCCAATTTTGAGGAAAAACTTGAAATACAACTTTTGTCTCAATCATGGACCAGTGAATTTGGATCAGAAATAAAAGTGGATTCAGTCAAGTGGTTTCGCCATGATAGTATTGTTATTGGATGCACACATTCTAAGGTAGATGTTGATGAAGATGGATATCTAGTACAAGTGATAATTAGTGGGGAGCATAAATTTACTGAGGCTTCTTGCAAACCAGTTATCTTCTCTTTTTCTGATTTATTTGAGGGACTTGCTATAGATATGTTGCCATCTGGAGTTGGGCCATATTTTCTCGCAGATTATTTAGATTGTTGGAATGTTGCAATTGCTTCGAATAAAAAGAATATTGATCAGCATATTTCATTGCTAAGATGGCTAGTTGAAGATAATAGATATGAAGTTGTGTCTCTTGAATTTGGAAGTGATAAATATCTACCCAGGATTGATTTGCAAGATGGTGGAGATGACAATTTGATATTAGGCCTCGCGGTCGACAAAAGCTCTTTGTGTGAGAATATTAAGATTCAGCAAGATACGGAGTTTGTTGAACTTTCACCGCGGTGTATTCTTCTTTGCCTTACCTGTGATGGAAAACTTACCTTGTATCACACTGCTTGGATTTCTGAACCTTCTGATTTACCAAATATGACCTCTCTTCATGATGACAAATTTGTAAATGAAAGATTTCATACTGAGAGTTCAAGTGAGTTGGGGGTAACTACCTCAGGGCTGAAAGATGGACTGAACGCAGGTGACAAACTGGGTAGTTGTCAAACATTGGACAGTGAAGAGTCATACTCACAAGGATCTTGTATGATGATATCTAGTTATTCAAGAAGTTCTGCCACTGAATGGCCTAGGATGCCTTCTAATGCAAAAGATTTTAGCACCAACTCAGCTAACAATGTATTGGCAATTGATTCATTGATGGTTAAAAGAAATGGGGATAAAGAGATTCATGGATCAGCTATTGCAGTGGGATCTCTGTCACAAAAGGCCCAGAAGCCTGTTGAAGTACTTTTCTCAAATGCAAGTGCTTCTTCTACTGTAAAGGAAACTGTGACTAGTAGAATTATTGGTTCAAATGCAAACAACGGATCATCATCTTGGTCTCTAACTGCAATGCCCCTTGCAGCTGATACTGCAGGTGCAAAGCATTTTTATTCATCTCATGGTGAATCCAATTCTAATATTCCAGAAAATACAGTACTTTTTTTCCCGCCAAGTAATCCTTCAGCCAATTTTTCTACTCTTAGGAAGCCATTTGGTACACCTGCCTCATCTGAGAACATCAATCAAACCGGCGTGCCCGTCTCTTTCACCAAGTCTGAATTCACAGGGCCAACTTCCATCCTCCCTAGCTCATCAGTGGGATCTCTACCACAAACGGCCCAGAAGCCTGTTGAAGTAGTTTTATCAAACGCAAGTGCTTCTTCTACTGTAAAGGAAACTGTTGCGAGTATAATTTTTGGTTCAAATACAAACAACGGATCATCCTGGTTTCAAACTACAATGCACCTTGCATCTGATACAGCAGGTGCAAAGCATTTTTTTTCATCTCCTAGTGAATCCAATTCTACTATGCCAGAAAATACAGTAGTTTTTTCCCCGCCAAACAATCCTCCAGCCAATTTTCCTACTCTTAGGAAACCATTTGGTACACCAACCTCATCTGAGAAAGTCAATCAGACCAGTGCGCCTGTCTCTTTTACAAAGTCTGGATTCACAGGGCGAGCTTCTATCCTCCCTAGCTCGTCAGAGGCAGCTTCAGCAAAGTTGTCTGGTTCTAAGCAACAGCCCCTCATTGCTAATTCTGCATTCTCCAAACCTCGTCCGAGGTTGGATTCTGAACCACAGTTCTCTAAGCAGTCGTACAATGTGAAAGATATGGCCAAAGAACTTGATGCCCTGTTGTATTCTATTGAATATGAAGGTGGATTCAAGGATCTTTGCACTGTTTTTCAGGAACAATCACTGTTGGTATTGGAGGCTGGTTTATATGATCTTTCAGAGGTGTTAAATTATTATGGGGATAAAAACGAAAATCAACTTATAAAGGTTCAACAGCTTTGTAATAAGATGTCGGAAGTATTTGCTAGACTAGTTTCTTTGAAAAGCCTACTTCAACGAGCTTCCGATCACCGGTACCGGGACATATGGAATAGCCAAAAGTTAAGTTCTGAATTTGAGGCGAAGTGGCTGCGTATTTCAATTTTGAAGCAGAACTTGAGAAATCAACTTATAGAACTGGAAAGGCATTTTCACAGTCTTGAAATTAATAAATTTGCTGGAGGTGAAACACCTACTACAGGATGGAGAGCTCCATGCAATTCTGCACTCTTAAGACAAACTCGATCATTTCATAGTGTGTACAATACTGTAAACTCACAACTGGCTGCAGCGGAGCAGCTTTCTAAATGTCTTTCACAGCAGATGGGTATGCTAAATATTAACTCCCCTACTTCAGAAAAGCAAAATGTCACCAGGAAACTGTTTGAAACAATTGGCCTTGATTCCAAAACTGATGCTTTCAAGTCTCGTGATTATAAAACTTCGAAGTCTGCTCCAAGTGCTGTTAAAACTTTTAAGCTTGAGTCTTCTAGAAGGAAAAAAGACTCTCTGGAAAAGAGTTGGGTGCATTTTGAACCTTCAAAGACCACAGTGAAGAGAACCTCAAAGAAGGAACAAGTTAGATCGAACTTGGACGTAGCTTTCAGGGATGCTAAGGATGTCTTTGACTCTCAATTGAAGGCCTTTGACATTGCCCAGAAGGCCACTTCCGAGACCTTAGATTCTCCTATCCAAGTCCCTGGCATCACCAAACGAACATCATTCATGTCAAACACAACATTCATTAACCCTCCTCCATTCCTCGAGTTATCTCCAAGTAAAGGCTTTGTAGAGAAGGAATCGTCCAAGGAAGCAATTGAAGCCCCGTCCAAATCCCTATTTAAATTTCCAAAAGAGCCTTCAGTTCTTCGTTCAGAACCCAATACAGGCTCCAGTTCTTCAATTCCATGCCTGTTTCCTGCAGCAGGGACTCAGCCGTTCTCATTTCCAGCACAATGGATGAACAGTGGCGAGAAATCCACTTTGCCGCCATCGATGAACAGAGACGAGAAATCCTTACAGTTCTCATTTTCAGCACCGTCAATGAACAAAGATGAGAAATCCGCCTCGCCGCTCTCATTTCCAGCAGCATTGATGAACAAAGCCGAGAAATTTGCTTCACCCTTTACGCCAAACCCTGGCGCATCATCCACATTGAACATTTCAGCCAGTGCAGCATCAAAAACACCTTTGATAACTAAACCGCAATCTGACTCCTCCACCGCGTACTCCGGCAGTACAAGCAGTCAATCAAACAAGGGCATATCTAGCATAATAAATGAAGCCGATGTACCAACAAGCCCATCACAGCAAAGTCCCGAGAACCCAACTATTCCTTCGAGCACCTTTTCAACATCCTCAGCCGCTTCGCCGACCTCTTCCAGCCTTTCGTCTTTTCAGTTCAGGAAATCTATGCCACCTCCCAAAATATTCTCGTCTTCAAGCAACAAATCTGATGATCCCCCTTCCTCTTCAAGTGAGCTCAGTTCCAAGCCTTTGCAGCCTGCCCCAGTTTTAAGTTCCTATGAAAATTCCCTATCCTCGAATAAAACTAAGGATGCCATTCTTGTATCCGAATCTCCGCCGGTCTCTCTCAGCAATATGTTTCCTCTGAAAAGCCAAGGGAACTTGAATCCTTGCAGTAGCATCAATGTGGAACCTACTGATGATGATACTGACAATTCCAAGCTTCCTGCAAGCAGTGATCCTTCGAAAGATGAGTCCATTGATGCTATTCTTTCCCAAGAGGATGCGATGGAAGAAGAGACTCTGGATGCTGCCAGCCACCCTGCACTGAGCTTAGAATCGCTCAGCAGTTTCGCCCTGCAATTGTCCGCCCCTTCCTCGAATGTCCAGAAGCCGAATCCTTTCGGAAGCTCGTTTTCGGCAGCCGGCGCCAACCCTGCTCTTTCGTGGAGCGCCTCTCCAGGGCAGCTTTTCCGGCCTCCTTCTTTCAGCCTCCCGGCGTCCCAACCGCCGCAATTGTCCGGTTCGAATTTGAGTGCCGGAGGCCTCACTGGCGTGTTCAGTGGCTTTGGGCAGCCGGCGCAGCTCGGGGCAGGGCAGCAGGCGCTCGGCTCCGTTCTCGGCTCTTTCGGGCAGTCGCGGCAGCTAGGTGATGGCGCCCCAGGGCTCGGCTTTGCTTCTTCAAATATTGGTTTTGCCGGTGCGGCATCTGGGGGCGGTTTTGCTGGAGCAGCCACCGGGAGCGGTTTCGCAGGAATTTCTACTGGGGCCGGCTTTGTTAGTGCAGCCACTGGGGGTGGCTTTGCCGGGGCCACCACTGGGGGTGGCTTTGCTGGTGCGACCACTGGGGGCGGCTTTGCCGGGGCGGCCACAGGGGGCGGTTTTGCCGGAGTTGCGGCTGGGGGCGGTTTCAGTGCTGCTGGTGCTGCTGGTGGTAGCGGTTTTGGAGGAGCCAACTCCATGGGTGGCTTTGGAAGCTTCGGTGGAAGGCCGCCAGCTGAGCTATTTACCCAGATGAGGAAGTGATATGTGGGCTTTCGGAAGCTTCCTTTATAAAATTCGTCTCGTTTGACAATCTTGTTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX011279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX011279
MVGKSTPLISLKEEIEGDCVGTVDFVFFRIGDPIPLKPSHCDSSFDLSNPPSQPLAVSERHHLLFLAHSEGFLVANTKNVVKLAKGTRGKDTCVQESCVVNVLIGRVSILALSGDSTMLSATVGGEIRLYFVPSLLIKAQDPAITFSLNNSGIVKELKWQKNLADSFIVLSSDGILFHGSSNTQLKDVMDKVDAVDWCVDGNFVAIARKNTVSILSPNFEEKLEIQLLSQSWTSEFGSEIKVDSVKWFRHDSIVIGCTHSKVDVDEDGYLVQVIISGEHKFTEASCKPVIFSFSDLFEGLAIDMLPSGVGPYFLADYLDCWNVAIASNKKNIDQHISLLRWLVEDNRYEVVSLEFGSDKYLPRIDLQDGGDDNLILGLAVDKSSLCENIKIQQDTEFVELSPRCILLCLTCDGKLTLYHTAWISEPSDLPNMTSLHDDKFVNERFHTESSSELGVTTSGLKDGLNAGDKLGSCQTLDSEESYSQGSCMMISSYSRSSATEWPRMPSNAKDFSTNSANNVLAIDSLMVKRNGDKEIHGSAIAVGSLSQKAQKPVEVLFSNASASSTVKETVTSRIIGSNANNGSSSWSLTAMPLAADTAGAKHFYSSHGESNSNIPENTVLFFPPSNPSANFSTLRKPFGTPASSENINQTGVPVSFTKSEFTGPTSILPSSSVGSLPQTAQKPVEVVLSNASASSTVKETVASIIFGSNTNNGSSWFQTTMHLASDTAGAKHFFSSPSESNSTMPENTVVFSPPNNPPANFPTLRKPFGTPTSSEKVNQTSAPVSFTKSGFTGRASILPSSSEAASAKLSGSKQQPLIANSAFSKPRPRLDSEPQFSKQSYNVKDMAKELDALLYSIEYEGGFKDLCTVFQEQSLLVLEAGLYDLSEVLNYYGDKNENQLIKVQQLCNKMSEVFARLVSLKSLLQRASDHRYRDIWNSQKLSSEFEAKWLRISILKQNLRNQLIELERHFHSLEINKFAGGETPTTGWRAPCNSALLRQTRSFHSVYNTVNSQLAAAEQLSKCLSQQMGMLNINSPTSEKQNVTRKLFETIGLDSKTDAFKSRDYKTSKSAPSAVKTFKLESSRRKKDSLEKSWVHFEPSKTTVKRTSKKEQVRSNLDVAFRDAKDVFDSQLKAFDIAQKATSETLDSPIQVPGITKRTSFMSNTTFINPPPFLELSPSKGFVEKESSKEAIEAPSKSLFKFPKEPSVLRSEPNTGSSSSIPCLFPAAGTQPFSFPAQWMNSGEKSTLPPSMNRDEKSLQFSFSAPSMNKDEKSASPLSFPAALMNKAEKFASPFTPNPGASSTLNISASAASKTPLITKPQSDSSTAYSGSTSSQSNKGISSIINEADVPTSPSQQSPENPTIPSSTFSTSSAASPTSSSLSSFQFRKSMPPPKIFSSSSNKSDDPPSSSSELSSKPLQPAPVLSSYENSLSSNKTKDAILVSESPPVSLSNMFPLKSQGNLNPCSSINVEPTDDDTDNSKLPASSDPSKDESIDAILSQEDAMEEETLDAASHPALSLESLSSFALQLSAPSSNVQKPNPFGSSFSAAGANPALSWSASPGQLFRPPSFSLPASQPPQLSGSNLSAGGLTGVFSGFGQPAQLGAGQQALGSVLGSFGQSRQLGDGAPGLGFASSNIGFAGAASGGGFAGAATGSGFAGISTGAGFVSAATGGGFAGATTGGGFAGATTGGGFAGAATGGGFAGVAAGGGFSAAGAAGGSGFGGANSMGGFGSFGGRPPAELFTQMRK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14317	NUP214, CAN	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.040
SRP064423	SRR2545915	Juvenile tuber	14.110
SRP108465	SRR5643513	five period of Gastrodia elata	6.250
	SRR5643514	five period of Gastrodia elata	6.520
	SRR5643515	five period of Gastrodia elata	5.250
	SRR5643524	five period of Gastrodia elata	5.420
	SRR5643525	five period of Gastrodia elata	4.470
	SRR5643528	five period of Gastrodia elata	2.700
	SRR5643658	five period of Gastrodia elata	3.960
	SRR5643659	five period of Gastrodia elata	6.020
	SRR5643660	five period of Gastrodia elata	8.410
	SRR5643661	five period of Gastrodia elata	6.960
	SRR5643662	five period of Gastrodia elata	6.960
	SRR5643663	five period of Gastrodia elata	6.740
	SRR5643664	five period of Gastrodia elata	7.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.540
SRP279888	Gastro	Gastrodia elata tuber	12.70
	Juven	Juvenile tuber	11.49
	Mother_Gastro	Mother tuber of Gastrodia elata	9.29
	Mother_Juven	Mother tuber of Juvenile	8.62