Gene detail

Detail information of GWHGAAEX011282/evm.TU.scaffold_37.18

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2397	4.00E-176	Protein kinase C substrate, 80 KD protein, heavy chain
nr	gi\|672116128\|ref\|XP_008781219.1\|	0	PREDICTED: glucosidase 2 subunit beta-like [Phoenix dactylifera]
Swissprot	tr\|A2WNF5\|GLU2B_ORYSI	0	Glucosidase 2 subunit beta (Precursor)
trEMBL	tr\|D7SLN8\|D7SLN8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16566.3}
TAIR	AT5G56360	4.00E-176	calmodulin-binding protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	413710	456507	-

Transcript Sequence
>GWHTAAEX011282 GCTGTAGCTTAACCGGATACCGAGCTGCTTCGCTCGGACCGGTCTGCCAAAATCTCCTGTTTTCAATTCTTTGACGGCTCCCTCTGCTTACTTCCAACCTTCTGATGATCTCTTTGCCCGCCGCTCTTCCTAACATATTGTTTTTGGGGCTGAAGAATTGATGGAGTCCCACTTTCGATTTGCTCTTTTTCTCACTAACTTTTTCATCACTTGGGTTGTCTCTGGTGCGGCTTCAATCCCTGATAATCAATTGCTGGGCATTGATCCGCAAGATTTGAGCTATTACAAATCAAGAGTGATTAAGTGCAAGGACGGATCAAAGAACTTTGCAAAAGAATCGCTTAACGACGATTTCTGTGACTGCCTAGATGGAACGGACGAGCCGGGAACTTCGGCTTGTCCAGAAGGAAAATTTTATTGCAGGAATGCTGGTCACATTCCTATTAGAATCTTCTCTTCTCGGGTTAATGATAGAATTTGTGATTGCTGTGATGGGAGTGATGAATACGCTAGTAATACAAATTGTACAAATACATGTTGGGAAGCTGGAAATGCTGCAAGAGTAAAATTGAAGAAGAAAATAGAAACTTTTAAAGAAGGAGTTCATATAAGGAAAGCAGAAGTAGAAAAGGCAAATCAAGAATATGCTAAAGATGAGACAGATCTGGTAAAGCTGAGAAGTGATGGAAAGATGCTTAAAGACTTGGTGCAAAAACTTAGAGAACAAAAGGAAAGAATAGAGAAGGTTGAGGAGGAAGAACGATTGAAGAAGGAGAAAGAAGAAAAGAGATTGAGGGAAGAGGCAGATAAGTCTAAGGAACAAGAGAAAAAAGCAGAGGAAAATCAACATTGTGGCAAAAATGGTAATTATGAGCAGGATGGATCAATAAGCAGCCTTAATACGCCAAATGATAACAAGATTTCTGGTGAAGGTCCTGATGATTCATTGGAATCCAGTTCAGATGCTTCAGAGATTTCTCCCAATGAGTTTATGAGAGATGCTGATGATTCATTGGAATCCAGTTCGATTGCTTCCAAGATATCTCCCAATGAGGAGCAAGTTGATTCTGGTACTACCAAAGAGTTATCAAGAGAGGAGCTGGGACGTCTTGTTGCTTCCCGCTGGACTGGTGAAGGTACTGGTAAGACAACTGATAAAATTGAAAAAGTTGAGGAAGACCTAATGGATGAAGACCCAAGTGCCTCTGATGAACACAGTGGCCATGCCTCAGAAGCTTATGATGACAGAGAAAAAGATAACTATCAAGATGATGACACCTTTGAAGATGATCAAGATGATGAGTTTGAAGATGATCATGCCGGTTCAGAGGGATCCTATTCTTCTGATGAGGCTGAGAAGCCTGACTCTGCAGATATCAAAGAAGCAAGCAGCTCTTCATGGTTGGGCAAGATACAGCAAACTGCACATAGTGTGTTACAGGCTTTCAACTTTTTCAAGACTCCAGTGAATGTGTCAGAAGCATCGCATATTCGAAAGGAATATGATGATGCAAGTTCAAAATTGTCGAAAGTGCAGTCAAGAATATCCAGTTTGACAGAAAAGCTAAAGCATGATTTTGGCAAGGAGAAGGAATTTTATTTTTTCTATGATCAGTGCTTTGAGAGCAAACAGAACAAGTATGTGTACAAAATATGTCCATTTAAGCAAGCTTCACAGGAAGAGGGATATAGAAGTACTCGATTAGGTGGTTGGGACAAATTCGAAGAATCTTACAAGCTTATGGTTTTCTCTGATGGCGAGAAATGTTGGAATGGCCCTGATAGGAGCTTAGAAGTTAGGCTTAGGTGTGGATTGAAAAATGAGCTGAGTGATGTTGATGAGCCAAGCAGATGCGAATATACTGCGTTGATGTTCACTCCTGCAGTTTGCTTAGAAGATAAGCTAAAGGAGCTGGAGAAGAAGCTAGAGCAAATGAACTCAAGGGAGCCTCCAAGCCATGATGAACTTTGAAGAGCATTTCTCCACATATATAGTATCGAGCTATATGTTGTCATAATCATCAGCCCATCATTATTTCTCGTGAGCTCACTATATTGGGGAGTATTTAGCAGGATTTTTATTGTAAGAGAGAAACAATGATTTTGATGAGCAATACACAATGAGTTTTAAGTTATTTTTGATTCACTATTTTTTTCAATTGGTGAAGTTTCAGCATACAGCTCAACTATTTTCTTATTTTTATAATCAAACTTAAATAATCACTTGGCATGAATATAGATAGTATGACTATGTGTTTGTGCTATGTTTTGCAATTTTGTGCTTCTG

Network for GWHGAAEX011282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12999.6	PRKCSH-like	21	161	2.90E-32
PF13015.5	PRKCSH_1	445	596	2.00E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08288	PRKCSH	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	89.530
SRP064423	SRR2545915	Juvenile tuber	57.250
SRP108465	SRR5643513	five period of Gastrodia elata	48.940
	SRR5643514	five period of Gastrodia elata	48.460
	SRR5643515	five period of Gastrodia elata	48.610
	SRR5643524	five period of Gastrodia elata	49.100
	SRR5643525	five period of Gastrodia elata	38.660
	SRR5643528	five period of Gastrodia elata	45.130
	SRR5643658	five period of Gastrodia elata	31.270
	SRR5643659	five period of Gastrodia elata	39.620
	SRR5643660	five period of Gastrodia elata	35.790
	SRR5643661	five period of Gastrodia elata	34.510
	SRR5643662	five period of Gastrodia elata	29.850
	SRR5643663	five period of Gastrodia elata	31.640
	SRR5643664	five period of Gastrodia elata	32.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	65.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	67.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	60.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	60.760
SRP279888	Gastro	Gastrodia elata tuber	28.35
	Juven	Juvenile tuber	40.19
	Mother_Gastro	Mother tuber of Gastrodia elata	38.57
	Mother_Juven	Mother tuber of Juvenile	37.03