Gene detail

Detail information of GWHGAAEX011290/evm.TU.scaffold_37.27

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672139248\|ref\|XP_008793404.1\|	PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A-like [Phoenix dactylifera]
Swissprot	tr\|Q9LUG9\|MD33A_ARATH	Mediator of RNA polymerase II transcription subunit 33A
trEMBL	tr\|M0RV79\|M0RV79_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P24990_001}
TAIR	AT3G23590	REF4-related 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	643396	707896	-

Transcript Sequence
>GWHTAAEX011290 CGTCAATATTCTACTTTTGATAAATAATTGGGTCCGGCATATAACACAAAAACTAAATGATGCTGCCATTATTCCACTCTTCCGATCCTTGCTTGTTCGCCGCCATGATCGCGGAGGCTTAGCTTCGAAAAGTTCGGGCGCAACGCAGACATCTTCATGGATGCCACCGGCGCGGCATCTGGCACAATCGAGCATCGCGTCATGGCGTTCTTAAAGGCACCGGAGGAACAGGACGATCTTTCCCTTTCGCGCACAATCGAGACTGCGCGCTGTGCTGGCGCTGGCATGGAATCGAACACGGAACTAGGGCAGGCCATTGTATCAGCTCTTTGCTTCGAGCATAACACACCGTCTCTCTGGAAGCTTCTCGACCAGGCAATTTCCGTTCGGATGCTCTCGCCTCTTTACGTCATCGCACTCCTCACTGCCAGGGTTATCCCGCACCGTCTATGTCAGCCGGAGGCTTACAGGCTTTACTTGGAGCTTCTCAGTAGATATGGCGTGTCGTTGTCGTTGCAGGAGTTTGGAGCTTCGAGATATAGGATAACAAAATCCATTGATGACGCCCTGCAACTTTCAAGCACATATAAGATTGAGAAAATAGATTTTGGTCATATGGTGATCTTTTTTGTCTTAACCATCATCATTTGTTTGATGGATGGTATTCTAGAAGATTTTGGCATTAAGCTTGTATTTCCTGACAAAGATGCAAATAAAGGTTCTTCCGAAGCCTTACAAAATATGGATATGGATCCTTTAAGAAATTCAGTTGAAAAGAGTAAAAGTCACCGTGAACAACTTCATAGATCAAATATGCTTATGGCTCTAGAAGTACTGGAGAAAATTACTTCGGACAAGAAGAACTTAGCATTTCTTCGTTATATTTATCACAACATGCCTGAGAAGTTTGCCAGCCTTCTGGAAAGACTGCAATTAATTGAAGTTCACAAATCCAGGGTACAAACCTTAATATCAACGACTTATATTTGGTCTAAATTACTTGCAAATGTTCGCCAAGTGCTGAATGGTGAATACAACTCAAATAGCCATGAATTTCTTGACTTACTAGTTGACGCTGGACTGAATGGTTCCATTTCTAGCAACAGTTTGGAAGCTGATAGATCTGCTTGTTGGATCCCTTTTGATGTAATCATGGAGAATGCCATGGAAGGAAGGCATCTTTATTCCATTTCTTCTGTTGAAATTCTTACAGAATTAACCAAAACACTGCAAGCTTTCAATCAAGCAAGCTGGCAAGAAGCATTCATCGCTCTCTTCATGTCTGCTTTGCGGCTTGTACAACGAGATCGTGAACCTTTGGAAGGACCAATACCTCACCTTGATGCTCGCATGTGCATGCTTTTATCCATTGTTCCTTTGACAATTGTTGCGATTGCGAAAGAAGAACTCAACAACCCTCACACCACAAGCAGTTGTGAATATGACTTGGATTCAAATAAGCCCACTCTTCGAAGGGACGAACTAATTTCTACCCTTAAGTTATTGCAAAACTATACTGCACTACTAACTCCACCTCCATCAGTTGTCAGTGCTGCAAACAATGCTGCTTCAAAGGCAGCAACATTCGTTACAAATTTTCGGAATGGGAGTAGCAGTATTGGTATCTCTGGACAAAAAATAACATCTTCAGCTAAAGCAGTAGGCAACTTGCTCCACCTTATTGTTGAAGCTTGTATTGCAAGGAAATTGGTTGATACATCTGCGTACCTTTGGCCTGGGTATGTAGTTCCATATGCAACATCAAAAGACTCGATGCTAATTCAAGAATCTTCTTGGTCTATCTTTATGGAAGGCGGCCAACTGAATAGTTCTCTAGAAAAAACTCTTATCATGGTACCTGCCTCAAGTGTTGCAGAGCTTGAAAAATTATATGATACTGCAGTAAATGGATCTGAAGAGGAGAAGCGTGCTGCTGCAAAGATTTTATGCGGTGCATCCCTCATTCGCGGATGGAATATTCAGGAGCATGCGGTACACTTTATTGTCAAGTTGCTATCCATTCCTATTCCTGTTGAAGTTTCAGGATCTGCAATCAGCAGTAATTTGATAAATTACATGCGTGTGATAAGTGCCATTCTTTTTGGAATTTGCTCGGTTGAGACGGTTCATATCATATCTTTGTATGGCAAGGTTCCTGAAGTAGCTGCAGCTTTAATGCCCCTTTGTGAGACGCTTGGGTCTCTTCCTCCACAATCCATTCACAGACCAGGCCATTCAGATGAGACATCAATCTATTCCATCTTTTCATGTGCTTTTCTCACTCTACTCCGCCTTTGGAAATTTTATAAACCCCCTCATGAAAATCGTATAGCAGGCCGAAATGGAACCATTAGGTCAGAGTTTACTTTGGACAGTCTCTTGTTGATGCATAACCACATGATTGCTTTTCGAGACCCTGGTAATAGAGTTATGTTCGATAGCTACACTGATTCATCGAATGTGTCAGGCAGTCAACCTGTTTATGTTGATTCTTTTCCAAAGTTACGAGCTTGGTACCTCCAAAATCAAGCTTGTGTTGCATCAACTCTTTCGGGTTTGTGTAATAAAAATCCAGTTCATCAAGTAGCAAACAAAATTTTGGACATGATATATCGCAAATTGACAAAGGGCGGAACAGTTTCCTGTAATCCCTCATCAACTTCTAGTAGCAGCATTAGTGGATCGCCCGTAAATAGCACAGAAGATACTTTCCAAAGGCCATTGCTTCCTGCATGGGAGGTCCTAGAGGCTGTTCCTTTTGTTCTTGAAGCTTTTTTGACTGCATGTGCCTATGGCCGGCTTTCTTCTCGTGATCTTACTACAGGTCTGCGGGATCTTGTAGACTATCTTCCTGGTTCCCTTGCAGTCATAATCAGCTATTTCTCTGCCGAAATTACTCGTGGAATTTGGAAACCTGTTGCCATGAATGGAATTGATTGGCCGAGTCCTGCTGCAAATCTTCTCTCAGTTGAATCAGAGATGAAGGAAATTCTTGCTTCTGCTGGAGTCACTTTTCCAGATGTTTATGCATGCGGGTCTGTGCCAATGCTTCCCTTACCGATGGCAATACTTGTGAGCCTGACCATAACATTCAAACTCGACAAGAGCCTGAACTACCTTCATGCGGTGATCGGCCAAGCCCTGGAGAACTGCGCTGCGGGGTGCCCGTGTCCCAGCATGCCCATAATCGGAGCTCTCTGGACGCAGAAAGTTCGTCGTTGGCACGAATTCATCGTCCTCTCCAGCTCCCTTTCCCCCTTCACCCGCGACAAGGAAACTGTCGCCCAGCTCATCCGATGCTGCTTTTCATCGTTCCTACCATCCTTCCACACCACCAATCTCCACGGTGGGGTCAACAGTCTCCTTGGTCAATCGATCTCTGGCAGGAGCTTCCCCTTCCCGATCGGCCCTGGCTACCTCTACGTCCGCTCGTGCCGCTCCTTCCTCGACGCGCACTTCATCAGCAACCTGATCCTCAAGCTAGTCATCGAGCAGGCCCACGAGCTGGGATCCGGGCGGGCTCGGGGCCACCCGTCGCTCGCAGCCGCCGCTTCCGCCGTCCGGAAGGCGGCCGCCCTCGGAGCCAGCTTGCTGTGCATCGCCGGCGGACCCCTCCTACTGCAAGTTCTGTACGAGGAAACGGTGCCCGCTTTGCTGCTGTCGGCCGGGGACGCGGCCCTTGACAGAGGGCTCGCCGTGCCCGCACGGCTTCTGGCAGGCTACGCAATGGCATGCATGCTCGTTCAGTCCGGCGCGATCATCTGGGGCGTCGGGAAGACCTCGCCGGCCTACACGTCGTTGTTCACGAAGAGGCGGGCGAGGTCTGTTGGGATTCATCTGGAGTTCGTCGCCGGGGGAGTGGAGGGGAACGTATCGGTTGGGTGCGACCCCGTTACTTGGAGAGCCTACGCAATTTGCCTCATCGGGCTGTTGGCGCGGCGCGTTCCTGGATGGATCTCAGAAGTGCGGTGGCAGACAATCAGGAAGCTGGCCGCCGGCATGAGGGGGTGGAACGAGTGCGAGCTTGCTCTGGCGATCCTCGAGCGGGGTGGGCCGGCTTCGGCTGACCTGCTGGTCGAGTCTCTGCTGTGATGTGAGGGTTCGTTCAATGCTGTTCAAATGCCCGACGAGTTCTTGCCATTTTAATGTTATTAGGAATTGATGATGGAATGTCTCATAAATTATCATGCTTCATCTAAAAATGAATGAAAGTTTGGGTTCTGGAATTTAAATTTAGCTTCTGTTGTATGTATTATGTATAGTCGAAAGCATTATTTTTATAAGCTACGTTGCTATGTTTAATTGTCTATGTAATGTCGGATAGAAGATATGTGAAGTCTTTTGTAGATAAATGAAATTTTGTTAGAATCACAC

Network for GWHGAAEX011290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX011290
MDATGAASGTIEHRVMAFLKAPEEQDDLSLSRTIETARCAGAGMESNTELGQAIVSALCFEHNTPSLWKLLDQAISVRMLSPLYVIALLTARVIPHRLCQPEAYRLYLELLSRYGVSLSLQEFGASRYRITKSIDDALQLSSTYKIEKIDFGHMVIFFVLTIIICLMDGILEDFGIKLVFPDKDANKGSSEALQNMDMDPLRNSVEKSKSHREQLHRSNMLMALEVLEKITSDKKNLAFLRYIYHNMPEKFASLLERLQLIEVHKSRVQTLISTTYIWSKLLANVRQVLNGEYNSNSHEFLDLLVDAGLNGSISSNSLEADRSACWIPFDVIMENAMEGRHLYSISSVEILTELTKTLQAFNQASWQEAFIALFMSALRLVQRDREPLEGPIPHLDARMCMLLSIVPLTIVAIAKEELNNPHTTSSCEYDLDSNKPTLRRDELISTLKLLQNYTALLTPPPSVVSAANNAASKAATFVTNFRNGSSSIGISGQKITSSAKAVGNLLHLIVEACIARKLVDTSAYLWPGYVVPYATSKDSMLIQESSWSIFMEGGQLNSSLEKTLIMVPASSVAELEKLYDTAVNGSEEEKRAAAKILCGASLIRGWNIQEHAVHFIVKLLSIPIPVEVSGSAISSNLINYMRVISAILFGICSVETVHIISLYGKVPEVAAALMPLCETLGSLPPQSIHRPGHSDETSIYSIFSCAFLTLLRLWKFYKPPHENRIAGRNGTIRSEFTLDSLLLMHNHMIAFRDPGNRVMFDSYTDSSNVSGSQPVYVDSFPKLRAWYLQNQACVASTLSGLCNKNPVHQVANKILDMIYRKLTKGGTVSCNPSSTSSSSISGSPVNSTEDTFQRPLLPAWEVLEAVPFVLEAFLTACAYGRLSSRDLTTGLRDLVDYLPGSLAVIISYFSAEITRGIWKPVAMNGIDWPSPAANLLSVESEMKEILASAGVTFPDVYACGSVPMLPLPMAILVSLTITFKLDKSLNYLHAVIGQALENCAAGCPCPSMPIIGALWTQKVRRWHEFIVLSSSLSPFTRDKETVAQLIRCCFSSFLPSFHTTNLHGGVNSLLGQSISGRSFPFPIGPGYLYVRSCRSFLDAHFISNLILKLVIEQAHELGSGRARGHPSLAAAASAVRKAAALGASLLCIAGGPLLLQVLYEETVPALLLSAGDAALDRGLAVPARLLAGYAMACMLVQSGAIIWGVGKTSPAYTSLFTKRRARSVGIHLEFVAGGVEGNVSVGCDPVTWRAYAICLIGLLARRVPGWISEVRWQTIRKLAAGMRGWNECELALAILERGGPASADLLVESLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.430
SRP064423	SRR2545915	Juvenile tuber	13.620
SRP108465	SRR5643513	five period of Gastrodia elata	13.460
	SRR5643514	five period of Gastrodia elata	13.790
	SRR5643515	five period of Gastrodia elata	13.120
	SRR5643524	five period of Gastrodia elata	12.960
	SRR5643525	five period of Gastrodia elata	13.640
	SRR5643528	five period of Gastrodia elata	11.470
	SRR5643658	five period of Gastrodia elata	11.760
	SRR5643659	five period of Gastrodia elata	11.140
	SRR5643660	five period of Gastrodia elata	13.310
	SRR5643661	five period of Gastrodia elata	12.640
	SRR5643662	five period of Gastrodia elata	10.010
	SRR5643663	five period of Gastrodia elata	10.420
	SRR5643664	five period of Gastrodia elata	10.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.810
SRP279888	Gastro	Gastrodia elata tuber	18.26
	Juven	Juvenile tuber	26.07
	Mother_Gastro	Mother tuber of Gastrodia elata	29.39
	Mother_Juven	Mother tuber of Juvenile	30.94