Detail information of GWHGAAEX011294/evm.TU.scaffold_37.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|147678136|ref|YP_001212351.1| | 2.00E-43 | cation transport ATPase [Pelotomaculum thermopropionicum SI] |
| KOG | KOG0202 | 1.00E-69 | Ca2+ transporting ATPase |
| nr | gi|657372835|gb|KEH18607.1| | 1.44E-73 | endoplasmic reticulum-type calcium-transporting ATPase [Medicago truncatula] |
| Swissprot | tr|O23087|ECA2_ARATH | 4.00E-70 | Calcium-transporting ATPase 2, endoplasmic reticulum-type |
| trEMBL | tr|A0A072TMF6|A0A072TMF6_MEDTR | 5.00E-74 | Endoplasmic reticulum-type calcium-transporting ATPase {ECO:0000313|EMBL:KEH18607.1} |
| TAIR | AT4G00900 | 1.00E-69 | ER-type Ca2+-ATPase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 816099 | 816632 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011294
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module9 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00689.20 | Cation_ATPase_C | 95 | 145 | 6.30E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.790 |
| SRR2545915 | Juvenile tuber | 1.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.020 |
| SRR5643514 | five period of Gastrodia elata | 2.390 | |
| SRR5643515 | five period of Gastrodia elata | 1.250 | |
| SRR5643524 | five period of Gastrodia elata | 1.460 | |
| SRR5643525 | five period of Gastrodia elata | 3.160 | |
| SRR5643528 | five period of Gastrodia elata | 3.890 | |
| SRR5643658 | five period of Gastrodia elata | 0.860 | |
| SRR5643659 | five period of Gastrodia elata | 2.900 | |
| SRR5643660 | five period of Gastrodia elata | 4.200 | |
| SRR5643661 | five period of Gastrodia elata | 2.220 | |
| SRR5643662 | five period of Gastrodia elata | 4.680 | |
| SRR5643663 | five period of Gastrodia elata | 4.120 | |
| SRR5643664 | five period of Gastrodia elata | 2.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.83 |
| Juven | Juvenile tuber | 3.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.62 | |
| Mother_Juven | Mother tuber of Juvenile | 3.09 |