Gene detail

Detail information of GWHGAAEX011301/evm.TU.scaffold_37.39_evm.TU.scaffold_37.40

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|387792898\|ref\|YP_006257963.1\|	2.00E-21	DNA/RNA helicase [Solitalea canadensis DSM 3403]
KOG	KOG0298	0	DEAD box-containing helicase-like transcription factor/DNA repair protein
nr	gi\|672118914\|ref\|XP_008782680.1\|	0	PREDICTED: E3 ubiquitin-protein ligase SHPRH [Phoenix dactylifera]
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	2.00E-40	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|I1GR42\|I1GR42_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G17650.1}
TAIR	AT2G40770	0	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	971987	1088373	+

Transcript Sequence
>GWHTAAEX011301 AAATAGAGAAATTTCTTGTTTGATAAAAAAAATTTCTGGGTCGAGCTGCGACAATGAGGATTGTCTCATCGGCGATTCGGGCGTCAAGCTACTCTCCGGTTGAAGCTGCGTTATTCAGCTGCAAACCAGCGCGAGAATAAGGCGTCAACGATTGTTCGTTCAATTTTTTTTAACCGGGAACACGTTTTGATTCTCCGGTTGAACTAACACCCCTCGGCCCTACTCGTTGCAAAACATCCTCTTCGTGTTTTCCCCATTTTAAGATTTAAAGATTTTATTCCACTGAATTGGAGAGTTCCAATGGGCCGAAAGAAGAATCGGCCAGTTCGTTCAGGTTCCCATGTATCACGAGTCGATGCGCCTCAGAGCACTGGTTCAGCTGATCAGAATTTTGCAACGGATAGCCTTTGCACGATTGATCGAGAGAATACTAATTTTAAGAAGCCATTCTATGTTGACATTGAGCCGCGCTATTCGGCTGTTGACAGACATTTTGATGTTGCAGAGGTATCACTTAAAACTGTGATTCTTTCTGATGGAGCAAGAAGTGATTTGCTGACTGAAGAGAGTTGTGCAGAAAATAAATTTTCGTTTCGTTTCTGCTTATTCGGAGTTGAAGAAGGTTCTTTCAGATTAGGCAATTTCTCTCTAGTATCGGCCGACAGTATTCTATTAGAGTGCATTTGTTTGGGAGTGCCCGACTCAAATGGATGCTGCGAAACTTCTGTTATTTTCTCGGGATTTTTTGATGGCCCAGATGAGAGTATTTATGGGTTTGTGCACTTGGTGTACCTTAAGTTTATGGGATTAAGGCTTTTGTCGGAGGCCGTAACACTTCCCAGTGATTCATCAGTTAGGTTCAGAATAGAAATTATGAGAAAGGCATTCGATGCTTCCAGGCATCCTTTGGAGATTGCAAGGCAACCTTGGAGAAGAAGTATGGTGAGCGTTTTCTCTTGGTTGCGCCCTGAAGTTACAACATCTGAAGCTATATACGGATTATGCCGATCGGATGTGATAGATGACTGTAAATGCCTTGAAACTAGCTGTTCTGGTTTAAGGAATCATTCTGAGTTTGATGCTTCTGGCTTTTATGAAGCTATCAAACCTTCAAAAGAGGAGCCTGTCTTTGAAAACGTTCTTCCTGATCTGCTTCCTTGTCTTAGACCATATCAGAAACGTGCTGTTTTTTGGATGGTTGCTAGAGAGAAGGCTACCTCCATTGAAAAAAAGTTTCAGCAATTGTCATCAGCTCCATTTTCAGTTCCTGTTGTGTTCCTTGAAGAGCAATTCAAAATGTTTTATAATCCATTTAATGGAAGTGTTTCATGGAGTCCATTACAATCCTCATATGTTTCTGGTGGCATTTTAGCAGATGAGATGGGACTTGGGAAAACTGTTGAATTATTAGCTTGCATTTTTGCGCATTGTAAGCAATCCTTGCAAGAATGCATTACCGATGATGAATCTGAAAAGATAGCATGCCAAATAAAAAGACAGAAAAGAGAACGTGTAGAGTGTATATGTGGTGCTGGTAGTGAGAGCCGGAAATATGAAGGGTTGTGGGTACAGTGTGATATTTGTGAAGCATGGCAACATGCTGTTTGTGTTGGATATCATTCCAGGAAGAAAGTATCTTCTCCTCGTGAAAGGAAGCCCTCTGGATTGGGTTCACGTGTTAAATCTAAGAATGATCAAAATATGAAGGAATCTGGTTATGTTATTGAGATGGAGGGAAATTTTGTGTGCTCTTTGTGCACTGAACTTACAGAAGCTGCCAAGATTAACGTATCTTCTGGTGCAACTCTGATAGTTTGTCCAGCTCCTATACAAGCACAATGGTACTCAGAGATTATACGTCACACGAGACCAGGTTCGCTGAAAATTTACATTTATGAAGGTGCAAGGAACATAACAACTGCTGCTGCTCTAAAATCTTTCATGGGCTTTCTGGTAACAGCTGATATTGTGTTAACTACATATGAAGTATTGAAAGAAGATCTATCACACGATTCTGACAGACATGATGGTGATCGTCATTTTCTGAGATTCCGAAAGAGGTATCCTGTTATTCCGACTTTACTTACAAGGATTCATTGGTGGAGAGTGTGCCTGGATGAGGCTCAAATGGTTGAATGCAACACAGCATCAGTAACAGAGATGGCAATGCGCTTGCATGCTCAACATCGTTGGTGTATCACTGGAACTCCAATTCAGCATCGACTTGATGATCTGTTTGGGTTGCTGCGATTCCTTAGAGCAGGCCCTTTTGATTCTTACAAGTGGTGGGTTGAAGTTATCCGAGATCCGTATGAGAGGAAAGACAAAGAAGCCATGGAATACACCCATCAAATATTCAAGCAAATTATGTGGCGTTCATCTAAAATTCATGTGTCAGATGAATTGCAGTTACCTCCACAGGAAGAGCGTTTGTTGTGGCTGATTTTGTCTCCCGTTGAAGAGCATTTCTATCAGAAGCAACATGAAACTTGTGTGAGATGTGCACAAGAAATTATTAGATATTTCAGAAATTCAGAAAGTTCTTGCAATGGCTTTCTCTCTCATGATGAAGTTGCAAAGCTTCTATGGCCACTTTTAAAGCTTCGTCAAGCCTGTTGTCATCCTCAAGTAGGGACGTCCGGCCTCTGCTCATTACAAAATTCTCCATTAACTATGGAAGAGATCCTTGAAGTTCTTATTGGAAAGGCAAAGATTGAAGGTGAGGAAGCTCTGAGGAGAGTAGCTGTAGCACTGAATGGATTAGCTGGGGTGGCAGCAATCGAGGATGATAACAAAAGAGCAGTTTCACTTTACAATGAAGCACTGGTTATAGCAGATGAAAACAGCAACGACTACCGGTTGGACCCTTTGTTGAGCCTGCACATTCATCACAATCTGGCTGAACTGTCTTCTTCCACTTCAGAATTTTGTCAGCACATGGGAGGACATTGTTCTGAAGCTAATGAGAACAAAAGGGACGTTCCTGGTACTTGTCAAAAACATTATTTTAAGAGAAGGAAAAATGATATGGATGACAAAAATAATTCCACAACTGAAGAATCCTTGGAGAAGCATGCCTTCTTAAATTCAAAGAACAATAATTTAAATGAGGAGAAAGACCAGAGAGCTAAGAATGAACTGCCATCTAGGTGTTATGCAGATGGTTGTCTGAGAGAAACTTGTGAAAAAATTAAGCAAAAGTACCTGTCTGCTTTTATTTCAAAATTGTCCTTGGTTCAACAAGACCTCAAAATTTCTTATAAGGAGGTTTGCAGTTTGACTAAAGAATGTGAAGCTCAGGGCATGAGCTGGTGGATGCAGGCACTTGATATTATTGGACAAAAAGAAGAGTTGTCTTATGATTTAATGAAAAAGATTGAACAGGCTGTTTCCAGGGTTGGTTGCAAATATGAATCATTTATAGTTTCTTCAAAGTTTCGGGATATGAGTGGCCTGAAATACACTATTCAAGTTGGTCTTGATACTTTACAGATGTCTAGGCAAGCTTTGATTTTACGGCTACTGCAAATTGATCAGACTATGGTGAAACCAGATCAGGCTGATGTTGAACGTGTGAGATACTGTCCTTATTGCAATGGTGGTGATGGTGACCTATGTATTCATTGTGAATTAGACTTCTTGTTTCAGGAATATGAGGCGAAGCTGTTTCTTTCAAGGAAAACAAGTGATACTGGTGTCATTGCATCTGTTGAAGAGGCAATGAACCATCACAAGAGAAAGTATGCGTTAAATAGTTTCTTTCGTAATGGCAAGATTTGTAAGGGAACAGGTGCTGATTATGGAGAAAACAAACAAAGGCATGCTAAAGAATATATTGAGGTTTTGAGACATCCTTCTGAATTGGAGATTATTCTTGGGGTCATTAGAAGTTATTCAAAAACAATCTTGGGTAGACAAGTTTATGAATTTTCTGGAAAACATTTACTACTCTTTGAGGCCATGCGTAGAGAATTTGCACAATGCAGGCTATTATCACGTTCACAAGCCCAGTTATTGTGTGCTCATGATGAAATCAAGCTTTCTATCTCTAGATTACGACTCAAGGAAACTGAGGATGAGCCAACTGCTACAAATATTCTTTGTAGAGAGGAATTGATTTCCTATAATTTGCAATTCACTAGCGATAAGCTTGCATCTTTATCTTCCTTGTCACGTTTGAAGGGCCAACTACGCTATTTGAAGGGATTGGCTGAAGCTAAAGCTGAAATAAAGTATCACAACCGATATTTATCTTCCAGGGATGAAGATCAAACTGACATGGCAAACACTACTTCTAATGAAAGTGATTGCCATCTCAAAACTGATGATGACGCTTGCCCCATTTGCCATGAAAAACTTGACAGCCAGAAGATGGTATTTGAATGCGGGCATGTAGTTTGCTGCAAATGTTGCTTACAGTTAACAGAAAAAGTAGTCCTTCGCTCTAGGAAGCATCAAAAGAATTGGCTTATGTGTCCAACTTGTCGTCAACGCACTGTAATGGAGCATGTTGCTTACGTAGATGAGAAACAAGATAAGGCTAGTGGCTCGAGGACATTAAAAGCTTGCCATACGCAAGATTGGAATGAGTGTTCCATTGCTGTTCAAGGATCTTATGGAACAAAGATTGAAGCTATTACAAGGAGGATTTTGTGGATAAAATCAACTGATCAAAATGCTAAAGTACTCGTTTTCTCAAGCTGGAATGATGTCCTTGATGTATTGCAGCACTCACTAGATTCTAATAACATCTCGTACGTTCGGATGAAAGGAGGGAGGAAATCACATGCTGCAATTGCTCAATTTAAAGGAGAGAGCAGCAGCAATGAAGGTGGGAAACGAACCTTAAAATCTAGACACATCCAAGTCCTTCTGATCCTTATTCAGCATGGATCTAACGGTCTGAATCTCTTGGAAGCCCAGCATGTTATCCTTGTAGAACCTCTCTTAAATCCTGCAATTGAAGCCCAAGCAATTGGCCGTGTCCACAGAATAGGGCAGGAGAAGAAAACTTTTGTTCATCGTTTCATAGTAAAGAACACTGTGGAGGAAAGCATATATAAGCTTAATTTGAGAAGGAATGGAAATTCCATGGCTGGTACTAAAGCTAATAGAAACCGATACAGCACATTGCTCACTGTACAAGATGTGGAGAGCCTGTTTCCTGCTTCGGCGGTGTCGGAAAATTCACAGGAGAATTCTGAATTCGCAAATGTACCGGCTGAGGAGGAAAGTCTCAGGCATTTTCCTGCTGCTGTGGCTGCTGGTCTTGCTGCTGAGATGAGGCTGTTGGCTTCTCTTAACAGCCAAGATTATGAAGTTTCAGGAAGCCTTTGATGAATGCTTTTCCTGATTGTGTGTCAGAACAAAGCTGAAGGGCTCTCACGTCTGTCTGAAAAATGTTGGTGCTTCTCATGGGGTGTTTATTTTTGTAAATTTGGATAATTTAGGTCATTTTTTCTGGTATAAAAGTGTCAATTGTGAAAATAATTATCTGTATGGCACACAATGTATGTATTTACATATCTAACAGGAATTTTAATATTAATCTCTTTTAGTAAAAATGTAGTGTTAAATGGAA

Network for GWHGAAEX011301

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	291	777	2.50E-90
PF00271.30	Helicase_C	1442	1566	1.30E-08

Protein Sequence

>GWHPAAEX011301
MGRKKNRPVRSGSHVSRVDAPQSTGSADQNFATDSLCTIDRENTNFKKPFYVDIEPRYSAVDRHFDVAEVSLKTVILSDGARSDLLTEESCAENKFSFRFCLFGVEEGSFRLGNFSLVSADSILLECICLGVPDSNGCCETSVIFSGFFDGPDESIYGFVHLVYLKFMGLRLLSEAVTLPSDSSVRFRIEIMRKAFDASRHPLEIARQPWRRSMVSVFSWLRPEVTTSEAIYGLCRSDVIDDCKCLETSCSGLRNHSEFDASGFYEAIKPSKEEPVFENVLPDLLPCLRPYQKRAVFWMVAREKATSIEKKFQQLSSAPFSVPVVFLEEQFKMFYNPFNGSVSWSPLQSSYVSGGILADEMGLGKTVELLACIFAHCKQSLQECITDDESEKIACQIKRQKRERVECICGAGSESRKYEGLWVQCDICEAWQHAVCVGYHSRKKVSSPRERKPSGLGSRVKSKNDQNMKESGYVIEMEGNFVCSLCTELTEAAKINVSSGATLIVCPAPIQAQWYSEIIRHTRPGSLKIYIYEGARNITTAAALKSFMGFLVTADIVLTTYEVLKEDLSHDSDRHDGDRHFLRFRKRYPVIPTLLTRIHWWRVCLDEAQMVECNTASVTEMAMRLHAQHRWCITGTPIQHRLDDLFGLLRFLRAGPFDSYKWWVEVIRDPYERKDKEAMEYTHQIFKQIMWRSSKIHVSDELQLPPQEERLLWLILSPVEEHFYQKQHETCVRCAQEIIRYFRNSESSCNGFLSHDEVAKLLWPLLKLRQACCHPQVGTSGLCSLQNSPLTMEEILEVLIGKAKIEGEEALRRVAVALNGLAGVAAIEDDNKRAVSLYNEALVIADENSNDYRLDPLLSLHIHHNLAELSSSTSEFCQHMGGHCSEANENKRDVPGTCQKHYFKRRKNDMDDKNNSTTEESLEKHAFLNSKNNNLNEEKDQRAKNELPSRCYADGCLRETCEKIKQKYLSAFISKLSLVQQDLKISYKEVCSLTKECEAQGMSWWMQALDIIGQKEELSYDLMKKIEQAVSRVGCKYESFIVSSKFRDMSGLKYTIQVGLDTLQMSRQALILRLLQIDQTMVKPDQADVERVRYCPYCNGGDGDLCIHCELDFLFQEYEAKLFLSRKTSDTGVIASVEEAMNHHKRKYALNSFFRNGKICKGTGADYGENKQRHAKEYIEVLRHPSELEIILGVIRSYSKTILGRQVYEFSGKHLLLFEAMRREFAQCRLLSRSQAQLLCAHDEIKLSISRLRLKETEDEPTATNILCREELISYNLQFTSDKLASLSSLSRLKGQLRYLKGLAEAKAEIKYHNRYLSSRDEDQTDMANTTSNESDCHLKTDDDACPICHEKLDSQKMVFECGHVVCCKCCLQLTEKVVLRSRKHQKNWLMCPTCRQRTVMEHVAYVDEKQDKASGSRTLKACHTQDWNECSIAVQGSYGTKIEAITRRILWIKSTDQNAKVLVFSSWNDVLDVLQHSLDSNNISYVRMKGGRKSHAAIAQFKGESSSNEGGKRTLKSRHIQVLLILIQHGSNGLNLLEAQHVILVEPLLNPAIEAQAIGRVHRIGQEKKTFVHRFIVKNTVEESIYKLNLRRNGNSMAGTKANRNRYSTLLTVQDVESLFPASAVSENSQENSEFANVPAEEESLRHFPAAVAAGLAAEMRLLASLNSQDYEVSGSL

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.930
SRP064423	SRR2545915	Juvenile tuber	8.590
SRP108465	SRR5643513	five period of Gastrodia elata	5.080
	SRR5643514	five period of Gastrodia elata	6.640
	SRR5643515	five period of Gastrodia elata	5.330
	SRR5643524	five period of Gastrodia elata	5.980
	SRR5643525	five period of Gastrodia elata	6.410
	SRR5643528	five period of Gastrodia elata	4.110
	SRR5643658	five period of Gastrodia elata	4.990
	SRR5643659	five period of Gastrodia elata	5.730
	SRR5643660	five period of Gastrodia elata	5.910
	SRR5643661	five period of Gastrodia elata	3.990
	SRR5643662	five period of Gastrodia elata	5.340
	SRR5643663	five period of Gastrodia elata	6.690
	SRR5643664	five period of Gastrodia elata	6.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.670
SRP279888	Gastro	Gastrodia elata tuber	10.04
	Juven	Juvenile tuber	11.47
	Mother_Gastro	Mother tuber of Gastrodia elata	8.93
	Mother_Juven	Mother tuber of Juvenile	11.38