Detail information of GWHGAAEX011302/evm.TU.scaffold_37.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220933028|ref|YP_002509936.1| | 0 | cation-transporting ATPase A [Halothermothrix orenii H 168] |
| KOG | KOG0202 | 0 | Ca2+ transporting ATPase |
| nr | gi|672133804|ref|XP_008790538.1| | 0 | PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Phoenix dactylifera] |
| Swissprot | tr|Q42883|ECAP_SOLLC | 0 | Calcium-transporting ATPase, endoplasmic reticulum-type |
| trEMBL | tr|M0ZGL0|M0ZGL0_SOLTU | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400000352} |
| TAIR | AT4G00900 | 0 | ER-type Ca2+-ATPase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 1096053 | 1099178 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011302
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00690.25 | Cation_ATPase_N | 9 | 76 | 3.00E-16 |
| PF00122.19 | E1-E2_ATPase | 129 | 344 | 1.10E-46 |
| PF00702.25 | Hydrolase | 361 | 728 | 7.80E-19 |
| PF00689.20 | Cation_ATPase_C | 799 | 1025 | 3.90E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.760 |
| SRR2545915 | Juvenile tuber | 5.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.700 |
| SRR5643514 | five period of Gastrodia elata | 4.350 | |
| SRR5643515 | five period of Gastrodia elata | 4.750 | |
| SRR5643524 | five period of Gastrodia elata | 4.550 | |
| SRR5643525 | five period of Gastrodia elata | 4.190 | |
| SRR5643528 | five period of Gastrodia elata | 4.130 | |
| SRR5643658 | five period of Gastrodia elata | 3.460 | |
| SRR5643659 | five period of Gastrodia elata | 5.580 | |
| SRR5643660 | five period of Gastrodia elata | 6.490 | |
| SRR5643661 | five period of Gastrodia elata | 6.640 | |
| SRR5643662 | five period of Gastrodia elata | 5.110 | |
| SRR5643663 | five period of Gastrodia elata | 5.820 | |
| SRR5643664 | five period of Gastrodia elata | 5.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.79 |
| Juven | Juvenile tuber | 3.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.66 | |
| Mother_Juven | Mother tuber of Juvenile | 2.64 |