Gene detail

Detail information of GWHGAAEX011305/evm.TU.scaffold_37.44

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743788768\|ref\|XP_010922747.1\|	1.17E-96	PREDICTED: U-box domain-containing protein 62-like [Elaeis guineensis]
Swissprot	tr\|Q6DBN5\|PUB62_ARATH	5.00E-52	U-box domain-containing protein 62
trEMBL	tr\|F6HC73\|F6HC73_VITVI	1.00E-90	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49785.1}
TAIR	AT5G05230	4.00E-10	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	1134221	1149755	+

Transcript Sequence
>GWHTAAEX011305 AAGTCAAATTTAATTATGGAAGTGCTGCTCCTCCGCCTCCCTACGAAAATGGCGGATTAAGCCCCAAAACCCTCAAGCAATCCCACGCATCTCCTTTGTCGGAAAAGTCATCATCTCCCCATCCTCGATCTCGACAGGAGATGACCCTGTCTCTAGTAATCACTTTCTGGATCCTCTTCCTCCTCTCCTACCATTACTGATACCGCATGATCCGGCAGACCGGGAACTAGGATTTCTTTCTCCGGCCATGGCATCCGAGGAGCTGCGCCTTGTCCAGCCTCAGAGGATGGATAGCGGATCCAGCTCTAGGATAGTGTTCCGCGACGGAGTCATGCCTTTTCTCCTTACCGGTGGTTGTATCGATCATCTGAAATCTCGGCCATCTTGCGGGTTCGTTATGGACAGCAGCAAGTTGTTCCCTAACGGAAAGGGGGAGGCACGCCTGTTGCACAATCAGGAGGCGGCGTTGCGCCGGAGCTTTTACGTTTCGTCTGGGAGGATTGATCGGGATGGGGAGAATGATCGTGGTCGAGGATGGAATGTTAACTGTAGTGGCGGCGGCTCGAGGAGCCGCGGAAATGGATCGGATGGGGACGATGCTGATGATGTGGTTGATGATGATGATGATGAACTCGATGAAGGCGATGGTGAGGTTGATGGATTGCTTCCTGTTGACTTAGGGGATGCTAATAAAAATAGCAACAACAGCAGCGGCAGTGCACAGAGTAGCTCTGAGAAGATCCGCAGTGACAAGGCAAACTTGGTGGAACAGCATTCTTGTTATGGGCCGAGTAGAACAATTATGGCCAAGGCCCGGAATGAAATGACTGGAAATTCAGAGCAGCAGCATCTCCATTGTGAGGGAGGGAATAATTATGAGAATGCAATCACCCTGGCAGAGCCTGAGCTTTACTGTAGTCAGATTTTTCATAGGGGAGAAGGGTCTACTGCAGTTCACAAGGCTTTAGGAGGAGATAATGAATACGGTTTAAGTGGTAGAAGGGAAATTAGCCTACCTACTTACCTCGGAGAATCTCTAAGAGCACATCTTTCAGATCCTGTTACGGGCATCCTCATGGATGATGCGATAATCTTACCTTGTGGGCATTCTTTTGGAAGTGGTGGAATGCAACATGTTCAGCGTATTAAATCTTGTTTTAAATGCTCTCTACCAATTTCAGAAGATTCAGTTCGACCAAATTTAGCTCTTCGTGCAGCCGTTCAGGCATTCCTTAGGGAGGAAGAGCCGCATATCTCAAAAATATTTAAACGAAGAAGGGACAGATTTGAACAGGATAAATATATTTATGATGATCAGCTTCCCACGGATTCACGAAACAGAGGGGCTCAGTTTCCATTTAATGTATCTGATCGTGTACTAATAAAGGGAAATAAGAGAACGCCTCAGCGATTTGTTGGAAAAGTGGCAGTTGTGACTACACAATGCTTAAATGGATGGTCGTGGGTTTCATGCAACGCTAGGATTGTGCAGTCTAATTTTGTTGTCACAAATTTTCTGCACACCATAGTCTACTATTGGTTATGGGAACCCTTCTATGCTTTGTGGGTTCCATGCATACTTCCTAATGTCGCACATATATAATACTGACACCCAGGGAGCCTTTTACTTCTAGTTCCATAACTCCTTTAATTGGGACCCTGGTTCTCATTCCAGTGGATATTTGCGAGGGTGCTTTCAGTTTGTCCTTTAAAAAGTTAGATTCACTGTATGGGGAAGCTTTAAATGAGATCCTTCAATTTTGTGAGAGGCTAACCAGCTGATCCTATTGCATGCTCCAGCAGGTAGGTACCTATTAGGACCAAATACTTGTCGGTAGTGGTATGTTCAAAAATGCCTTAGCATTGTATTGCTGCCACTAGTTTGGTCCTCACCATCACTAGTTTAACTCATCCATCTTGTTCTTCTTGATTGATCTCTAGCCTGCTTACAACTCCCACTCTGGCTCAGGTTAACCATGCTGAGTCTCTTTGTGCTACACTGCTGGAAGAAATCAGACTTTTTATCAAATTGTGTTATTGCTCACGTTGCCAGCTGTCCCTCAGATGAAGTGTACTTCGATCCATTAAAGCATGTTTATCGTTGCAATGCTATTATACATATTCAACAGGCACCTGTCATTCTCCTTTCTGAAGCGTTTTTTTTTTGTGAATTTGAAGTACTTTACTCTCTTTCAGTGCGAAGAATCACCACCTTTACTGAACCTGGTAAATGTTTTGTCGAACATTTTATTACTAAG

Network for GWHGAAEX011305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	79.300
SRP064423	SRR2545915	Juvenile tuber	62.160
SRP108465	SRR5643513	five period of Gastrodia elata	51.180
	SRR5643514	five period of Gastrodia elata	37.610
	SRR5643515	five period of Gastrodia elata	38.100
	SRR5643524	five period of Gastrodia elata	46.220
	SRR5643525	five period of Gastrodia elata	45.830
	SRR5643528	five period of Gastrodia elata	42.410
	SRR5643658	five period of Gastrodia elata	41.710
	SRR5643659	five period of Gastrodia elata	43.700
	SRR5643660	five period of Gastrodia elata	44.260
	SRR5643661	five period of Gastrodia elata	38.660
	SRR5643662	five period of Gastrodia elata	42.320
	SRR5643663	five period of Gastrodia elata	41.350
	SRR5643664	five period of Gastrodia elata	47.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.520
SRP279888	Gastro	Gastrodia elata tuber	59.32
	Juven	Juvenile tuber	75.43
	Mother_Gastro	Mother tuber of Gastrodia elata	46.14
	Mother_Juven	Mother tuber of Juvenile	64.48