Detail information of GWHGAAEX011311/evm.TU.scaffold_37.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332662044|ref|YP_004444832.1| | 0 | 4-alpha-glucanotransferase [Haliscomenobacter hydrossis DSM 1100] |
| nr | gi|672144566|ref|XP_008796184.1| | 0 | PREDICTED: 4-alpha-glucanotransferase DPE2 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q69Q02|DPE2_ORYSJ | 0 | 4-alpha-glucanotransferase DPE2 |
| trEMBL | tr|M0SCZ5|M0SCZ5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P08780_001} |
| TAIR | AT2G40840 | 0 | disproportionating enzyme 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000043 | 1314964 | 1338460 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011311
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00686.18 | CBM_20 | 18 | 106 | 8.80E-18 |
| PF00686.18 | CBM_20 | 160 | 246 | 2.00E-11 |
| PF02446.16 | Glyco_hydro_77 | 272 | 900 | 1.50E-150 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM20 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00705 | malQ | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:2001070 | Molecular Function | starch binding |
| GO:0004134 | Molecular Function | 4-alpha-glucanotransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 142.040 |
| SRR2545915 | Juvenile tuber | 128.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 73.490 |
| SRR5643514 | five period of Gastrodia elata | 82.110 | |
| SRR5643515 | five period of Gastrodia elata | 65.370 | |
| SRR5643524 | five period of Gastrodia elata | 77.640 | |
| SRR5643525 | five period of Gastrodia elata | 79.610 | |
| SRR5643528 | five period of Gastrodia elata | 61.030 | |
| SRR5643658 | five period of Gastrodia elata | 67.140 | |
| SRR5643659 | five period of Gastrodia elata | 70.980 | |
| SRR5643660 | five period of Gastrodia elata | 70.880 | |
| SRR5643661 | five period of Gastrodia elata | 62.270 | |
| SRR5643662 | five period of Gastrodia elata | 60.140 | |
| SRR5643663 | five period of Gastrodia elata | 72.120 | |
| SRR5643664 | five period of Gastrodia elata | 68.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 86.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 65.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 82.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 96.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 87.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 88.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 84.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 91.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 66.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 67.82 |
| Juven | Juvenile tuber | 76.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.90 | |
| Mother_Juven | Mother tuber of Juvenile | 35.37 |